OpenMS
2.6.0
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This is the complete list of members for XQuestResultXMLHandler, including all inherited members.
accessions_ | XQuestResultXMLHandler | private |
ActionMode enum name | XMLHandler | |
addMetaValues_(MetaInfoInterface &meta_info_interface) | XQuestResultXMLHandler | private |
asBool_(const String &in) | XMLHandler | inlineprotected |
asDateTime_(String date_string) | XMLHandler | inlineprotected |
asDouble_(const String &in) | XMLHandler | inlineprotected |
asFloat_(const String &in) | XMLHandler | inlineprotected |
asInt_(const String &in) | XMLHandler | inlineprotected |
asInt_(const XMLCh *in) | XMLHandler | inlineprotected |
asUInt_(const String &in) | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
characters(const XMLCh *const chars, const XMLSize_t length) override | XMLHandler | |
charges_ | XQuestResultXMLHandler | private |
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler | |
cpep_id_ | XQuestResultXMLHandler | private |
cpro_id_ | XQuestResultXMLHandler | private |
cross_linker_name_ | XQuestResultXMLHandler | private |
current_spectrum_search_ | XQuestResultXMLHandler | private |
cv_terms_ | XMLHandler | protected |
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected |
decoy_string_ | XQuestResultXMLHandler | private |
endElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname) override | XQuestResultXMLHandler | |
enzymes | XQuestResultXMLHandler | static |
enzymes_db_ | XQuestResultXMLHandler | private |
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
error(const xercesc::SAXParseException &exception) override | XMLHandler | |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
error_message_ | XMLHandler | mutableprotected |
errorString() | XMLHandler | |
expectList_(const String &str) const | XMLHandler | inlineprivate |
extractDateTime_(const String &xquest_datetime_string, DateTime &date_time) | XQuestResultXMLHandler | inlineprivate |
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
file_ | XMLHandler | protected |
getLinkPosition_(const xercesc::Attributes &attributes, std::pair< SignedSize, SignedSize > &pair) | XQuestResultXMLHandler | private |
getLoadDetail() const | XMLHandler | virtual |
getMaxScore() const | XQuestResultXMLHandler | |
getMinScore() const | XQuestResultXMLHandler | |
getNumberOfHits() const | XQuestResultXMLHandler | |
is_openpepxl_ | XQuestResultXMLHandler | private |
LD_ALLDATA enum value | XMLHandler | |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler | |
LD_RAWCOUNTS enum value | XMLHandler | |
LOAD enum value | XMLHandler | |
load_detail_ | XMLHandler | protected |
LOADDETAIL enum name | XMLHandler | |
max_precursor_charge_ | XQuestResultXMLHandler | private |
max_score_ | XQuestResultXMLHandler | private |
min_precursor_charge_ | XQuestResultXMLHandler | private |
min_score_ | XQuestResultXMLHandler | private |
months | XQuestResultXMLHandler | static |
ms_run_path_ | XQuestResultXMLHandler | private |
mz_heavy_ | XQuestResultXMLHandler | private |
mz_light_ | XQuestResultXMLHandler | private |
n_hits_ | XQuestResultXMLHandler | private |
open_tags_ | XMLHandler | protected |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
pep_ids_ | XQuestResultXMLHandler | private |
peptide_id_meta_values_ | XQuestResultXMLHandler | private |
prot_ids_ | XQuestResultXMLHandler | private |
reset() | XMLHandler | |
rt_heavy_ | XQuestResultXMLHandler | private |
rt_light_ | XQuestResultXMLHandler | private |
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual |
setPeptideEvidence_(const String &prot_string, PeptideHit &pep_hit) | XQuestResultXMLHandler | private |
sm_ | XMLHandler | protected |
spectrum_index_heavy_ | XQuestResultXMLHandler | private |
spectrum_index_light_ | XQuestResultXMLHandler | private |
spectrum_input_file_ | XQuestResultXMLHandler | private |
splitByMiddle(const String &input, const char separator) | XQuestResultXMLHandler | static |
splitByNth(const String &input, const char separator, const Size n) | XQuestResultXMLHandler | static |
startElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname, const xercesc::Attributes &attributes) override | XQuestResultXMLHandler | |
STORE enum value | XMLHandler | |
version_ | XMLHandler | protected |
warning(const xercesc::SAXParseException &exception) override | XMLHandler | |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
writeTo(std::ostream &os) override | XQuestResultXMLHandler | virtual |
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
XMLHandler(const String &filename, const String &version) | XMLHandler | |
XMLHandler() | XMLHandler | private |
XQuestResultXMLHandler(const String &filename, std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids) | XQuestResultXMLHandler | |
XQuestResultXMLHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &filename, const String &version) | XQuestResultXMLHandler | |
~XMLHandler() override | XMLHandler | |
~XQuestResultXMLHandler() override | XQuestResultXMLHandler |