MRMTransitionGroupPicker Member List

This is the complete list of members for MRMTransitionGroupPicker, including all inherited members.

background_subtraction_	MRMTransitionGroupPicker	protected
boundary_selection_method_	MRMTransitionGroupPicker	protected
check_defaults_	DefaultParamHandler	protected
compute_peak_quality_	MRMTransitionGroupPicker	protected
compute_peak_shape_metrics_	MRMTransitionGroupPicker	protected
compute_total_mi_	MRMTransitionGroupPicker	protected
computeQuality_(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, const int chr_idx, const double best_left, const double best_right, String &outlier)	MRMTransitionGroupPicker	inlineprotected
createMRMFeature(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, std::vector< SpectrumT > &picked_chroms, const std::vector< SpectrumT > &smoothed_chroms, const int chr_idx, const int peak_idx)	MRMTransitionGroupPicker	inline
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
findLargestPeak(const std::vector< MSChromatogram > &picked_chroms, int &chr_idx, int &peak_idx)	MRMTransitionGroupPicker
findWidestPeakIndices(const std::vector< MSChromatogram > &picked_chroms, Int &chrom_idx, Int &point_idx) const	MRMTransitionGroupPicker
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
min_peak_width_	MRMTransitionGroupPicker	protected
min_qual_	MRMTransitionGroupPicker	protected
MRMTransitionGroupPicker()	MRMTransitionGroupPicker
operator=(const MRMTransitionGroupPicker &rhs)	MRMTransitionGroupPicker	protected
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
peak_integration_	MRMTransitionGroupPicker	protected
pi_	MRMTransitionGroupPicker	protected
pickApex(std::vector< SpectrumT > &picked_chroms, const double best_left, const double best_right, const double peak_apex, double &min_left, double &max_right, std::vector< double > &left_edges, std::vector< double > &right_edges)	MRMTransitionGroupPicker	inline
picker_	MRMTransitionGroupPicker	protected
pickFragmentChromatograms(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, MRMFeature &mrmFeature, const std::vector< SpectrumT > &smoothed_chroms, const double best_left, const double best_right, const bool use_consensus_, double &total_intensity, double &total_xic, double &total_mi, double &total_peak_apices, const SpectrumT &master_peak_container, const std::vector< double > &left_edges, const std::vector< double > &right_edges, const int chr_idx, const int peak_idx)	MRMTransitionGroupPicker	inline
pickPrecursorChromatograms(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, MRMFeature &mrmFeature, const std::vector< SpectrumT > &smoothed_chroms, const double best_left, const double best_right, const bool use_consensus_, double &total_intensity, const SpectrumT &master_peak_container, const std::vector< double > &left_edges, const std::vector< double > &right_edges, const int chr_idx, const int peak_idx)	MRMTransitionGroupPicker	inline
pickTransitionGroup(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group)	MRMTransitionGroupPicker	inline
prepareMasterContainer_(const SpectrumT &ref_chromatogram, SpectrumT &master_peak_container, double left_boundary, double right_boundary)	MRMTransitionGroupPicker	inlineprotected
recalculate_peaks_	MRMTransitionGroupPicker	protected
recalculate_peaks_max_z_	MRMTransitionGroupPicker	protected
recalculatePeakBorders_(const std::vector< SpectrumT > &picked_chroms, double &best_left, double &best_right, double max_z)	MRMTransitionGroupPicker	inlineprotected
remove_overlapping_features(std::vector< SpectrumT > &picked_chroms, double best_left, double best_right)	MRMTransitionGroupPicker	inline
resample_boundary_	MRMTransitionGroupPicker	protected
resampleChromatogram_(const SpectrumT &chromatogram, const SpectrumT &master_peak_container, double left_boundary, double right_boundary)	MRMTransitionGroupPicker	inlineprotected
selectChromHelper_(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const String &native_id)	MRMTransitionGroupPicker	inlineprotected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
stop_after_feature_	MRMTransitionGroupPicker	protected
stop_after_intensity_ratio_	MRMTransitionGroupPicker	protected
subsections_	DefaultParamHandler	protected
updateMembers_() override	MRMTransitionGroupPicker	protectedvirtual
use_consensus_	MRMTransitionGroupPicker	protected
use_precursors_	MRMTransitionGroupPicker	protected
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~MRMTransitionGroupPicker() override	MRMTransitionGroupPicker