OMSSAXMLFile Member List

This is the complete list of members for OMSSAXMLFile, including all inherited members.

ActionMode enum name	XMLHandler	protected
actual_mod_site_	OMSSAXMLFile	private
actual_mod_type_	OMSSAXMLFile	private
actual_peptide_evidence_	OMSSAXMLFile	private
actual_peptide_evidences_	OMSSAXMLFile	private
actual_peptide_hit_	OMSSAXMLFile	private
actual_peptide_id_	OMSSAXMLFile	private
actual_protein_hit_	OMSSAXMLFile	private
actual_protein_id_	OMSSAXMLFile	private
asBool_(const String &in)	XMLHandler	inlineprotected
asDateTime_(String date_string)	XMLHandler	inlineprotected
asDouble_(const String &in)	XMLHandler	inlineprotected
asFloat_(const String &in)	XMLHandler	inlineprotected
asInt_(const String &in)	XMLHandler	inlineprotected
asInt_(const XMLCh *in)	XMLHandler	inlineprotected
asUInt_(const String &in)	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
characters(const XMLCh *const chars, const XMLSize_t) override	OMSSAXMLFile	protected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids)	XMLHandler	protected
cv_terms_	XMLHandler	protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)	XMLHandler	inlineprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override	OMSSAXMLFile	protected
enforced_encoding_	XMLFile	protected
enforceEncoding_(const String &encoding)	XMLFile	protected
equal_(const XMLCh *a, const XMLCh *b) const	XMLHandler	inlineprotected
error(const xercesc::SAXParseException &exception) override	XMLHandler	protected
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
error_message_	XMLHandler	mutableprotected
errorString()	XMLHandler	protected
expectList_(const String &str) const	XMLHandler	inlineprivate
fatalError(const xercesc::SAXParseException &exception) override	XMLHandler	protected
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
file_	XMLHandler	protected
getLoadDetail() const	XMLHandler	protectedvirtual
getVersion() const	XMLFile
isValid(const String &filename, std::ostream &os)	XMLFile
LD_ALLDATA enum value	XMLHandler	protected
LD_COUNTS_WITHOPTIONS enum value	XMLHandler	protected
LD_RAWCOUNTS enum value	XMLHandler	protected
LOAD enum value	XMLHandler	protected
load(const String &filename, ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &id_data, bool load_proteins=true, bool load_empty_hits=true)	OMSSAXMLFile
load_detail_	XMLHandler	protected
load_empty_hits_	OMSSAXMLFile	private
load_proteins_	OMSSAXMLFile	private
LOADDETAIL enum name	XMLHandler	protected
mod_def_set_	OMSSAXMLFile	private
modifications_	OMSSAXMLFile	private
mods_map_	OMSSAXMLFile	private
mods_to_num_	OMSSAXMLFile	private
OMSSAXMLFile()	OMSSAXMLFile
OMSSAXMLFile(const OMSSAXMLFile &rhs)	OMSSAXMLFile	private
open_tags_	XMLHandler	protected
operator=(const OMSSAXMLFile &rhs)	OMSSAXMLFile	private
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
parse_(const String &filename, XMLHandler *handler)	XMLFile	protected
parseBuffer_(const std::string &buffer, XMLHandler *handler)	XMLFile	protected
peptide_identifications_	OMSSAXMLFile	private
readMappingFile_()	OMSSAXMLFile	private
reset()	XMLHandler	protected
save_(const String &filename, XMLHandler *handler) const	XMLFile	protected
schema_location_	XMLFile	protected
schema_version_	XMLFile	protected
setLoadDetail(const LOADDETAIL d)	XMLHandler	protectedvirtual
setModificationDefinitionsSet(const ModificationDefinitionsSet &rhs)	OMSSAXMLFile
sm_	XMLHandler	protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override	OMSSAXMLFile	protected
STORE enum value	XMLHandler	protected
tag_	OMSSAXMLFile	private
version_	XMLHandler	protected
warning(const xercesc::SAXParseException &exception) override	XMLHandler	protected
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
writeTo(std::ostream &)	XMLHandler	protectedvirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const	XMLHandler	protected
writeXMLEscape(const String &to_escape)	XMLHandler	inlineprotectedstatic
XMLFile()	XMLFile
XMLFile(const String &schema_location, const String &version)	XMLFile
XMLHandler(const String &filename, const String &version)	XMLHandler	protected
XMLHandler()	XMLHandler	private
~OMSSAXMLFile() override	OMSSAXMLFile
~XMLFile()	XMLFile	virtual
~XMLHandler() override	XMLHandler	protected