OpenMS
2.6.0
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This is the complete list of members for PeptideAndProteinQuant, including all inherited members.
annotateQuantificationsToProteins(const ProteinQuant &protein_quants, ProteinIdentification &proteins, const UInt n_samples, bool remove_unquantified=true) | PeptideAndProteinQuant | static |
check_defaults_ | DefaultParamHandler | protected |
countPeptides_(std::vector< PeptideIdentification > &peptides, const Size &n_fractions) | PeptideAndProteinQuant | private |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
error_name_ | DefaultParamHandler | protected |
getAccession_(const std::set< String > &pep_accessions, std::map< String, String > &accession_to_leader) | PeptideAndProteinQuant | private |
getAnnotation_(std::vector< PeptideIdentification > &peptides) | PeptideAndProteinQuant | private |
getBest_(const std::map< Int, std::map< Int, SampleAbundances >> &peptide_abundances, std::pair< size_t, size_t > &best) | PeptideAndProteinQuant | inlineprivate |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getPeptideResults() | PeptideAndProteinQuant | |
getProteinResults() | PeptideAndProteinQuant | |
getStatistics() | PeptideAndProteinQuant | |
getSubsections() const | DefaultParamHandler | |
normalizePeptides_() | PeptideAndProteinQuant | private |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
orderBest_(const std::map< T, SampleAbundances > &abundances, std::vector< T > &result) | PeptideAndProteinQuant | inlineprivate |
param_ | DefaultParamHandler | protected |
pep_quant_ | PeptideAndProteinQuant | private |
PeptideAndProteinQuant() | PeptideAndProteinQuant | |
PeptideQuant typedef | PeptideAndProteinQuant | |
prot_quant_ | PeptideAndProteinQuant | private |
ProteinQuant typedef | PeptideAndProteinQuant | |
quantifyFeature_(const FeatureHandle &feature, size_t fraction, size_t sample, const PeptideHit &hit) | PeptideAndProteinQuant | private |
quantifyPeptides(const std::vector< PeptideIdentification > &peptides=std::vector< PeptideIdentification >()) | PeptideAndProteinQuant | |
quantifyProteins(const ProteinIdentification &proteins=ProteinIdentification()) | PeptideAndProteinQuant | |
readQuantData(FeatureMap &features, const ExperimentalDesign &ed) | PeptideAndProteinQuant | |
readQuantData(ConsensusMap &consensus, const ExperimentalDesign &ed) | PeptideAndProteinQuant | |
readQuantData(std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const ExperimentalDesign &ed) | PeptideAndProteinQuant | |
SampleAbundances typedef | PeptideAndProteinQuant | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
stats_ | PeptideAndProteinQuant | private |
subsections_ | DefaultParamHandler | protected |
updateMembers_() override | PeptideAndProteinQuant | privatevirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~PeptideAndProteinQuant() override | PeptideAndProteinQuant | inline |