This is the complete list of members for SiriusAdapterAlgorithm, including all inherited members.
| auto_charge_ | SiriusAdapterAlgorithm | protected |
| callSiriusQProcess(const String &tmp_ms_file, const String &tmp_out_dir, String &executable, const String &out_csifingerid, const SiriusAdapterAlgorithm &sirius_algo) | SiriusAdapterAlgorithm | static |
| candidates_ | SiriusAdapterAlgorithm | protected |
| check_defaults_ | DefaultParamHandler | protected |
| checkFeatureSpectraNumber(const String &featureinfo, const FeatureMapping::FeatureToMs2Indices &feature_mapping, const MSExperiment &spectra, const SiriusAdapterAlgorithm &sirius_algo) | SiriusAdapterAlgorithm | static |
| compound_timeout_ | SiriusAdapterAlgorithm | protected |
| cores_ | SiriusAdapterAlgorithm | protected |
| database_ | SiriusAdapterAlgorithm | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| elements_ | SiriusAdapterAlgorithm | protected |
| error_name_ | DefaultParamHandler | protected |
| feature_only_ | SiriusAdapterAlgorithm | protected |
| filter_by_num_masstraces_ | SiriusAdapterAlgorithm | protected |
| getCandidates() | SiriusAdapterAlgorithm | |
| getDefaults() const | DefaultParamHandler | |
| getFeatureOnly() | SiriusAdapterAlgorithm | |
| getIsotopePatternIterations() | SiriusAdapterAlgorithm | |
| getName() const | DefaultParamHandler | |
| getNoMasstraceInfoIsotopePattern() | SiriusAdapterAlgorithm | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| getTopNHits() | SiriusAdapterAlgorithm | |
| ion_tree_ | SiriusAdapterAlgorithm | protected |
| isotope_ | SiriusAdapterAlgorithm | protected |
| isotope_pattern_iterations_ | SiriusAdapterAlgorithm | protected |
| most_intense_ms2_ | SiriusAdapterAlgorithm | protected |
| no_masstrace_info_isotope_pattern_ | SiriusAdapterAlgorithm | protected |
| no_recalibration_ | SiriusAdapterAlgorithm | protected |
| noise_ | SiriusAdapterAlgorithm | protected |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| ppm_max_ | SiriusAdapterAlgorithm | protected |
| precursor_mz_tolerance_ | SiriusAdapterAlgorithm | protected |
| precursor_mz_tolerance_unit_ | SiriusAdapterAlgorithm | protected |
| precursor_rt_tolerance_ | SiriusAdapterAlgorithm | protected |
| preprocessingSirius(const String &featureinfo, const MSExperiment &spectra, std::vector< FeatureMap > &v_fp, KDTreeFeatureMaps &fp_map_kd, const SiriusAdapterAlgorithm &sirius_algo, FeatureMapping::FeatureToMs2Indices &feature_mapping) | SiriusAdapterAlgorithm | static |
| profile_ | SiriusAdapterAlgorithm | protected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| SiriusAdapterAlgorithm() | SiriusAdapterAlgorithm | |
| subsections_ | DefaultParamHandler | protected |
| top_n_hits_ | SiriusAdapterAlgorithm | protected |
| tree_timeout_ | SiriusAdapterAlgorithm | protected |
| updateMembers_() override | SiriusAdapterAlgorithm | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
1.8.16
