Load files containing runConcentration data. More...

#include <OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h>

Public Member Functions
	AbsoluteQuantitationStandardsFile ()=default

virtual	~AbsoluteQuantitationStandardsFile ()=default

void	load (const String &filename, std::vector< AbsoluteQuantitationStandards::runConcentration > &run_concentrations) const
	Load runConcentration data from a file and save it in memory. More...

Protected Member Functions
AbsoluteQuantitationStandards::runConcentration	extractRunFromLine_ (const StringList &line, const std::map< String, Size > &headers) const
	Extract one runConcentration from a single line. More...

Detailed Description

Load files containing runConcentration data.

Constructor & Destructor Documentation

◆ AbsoluteQuantitationStandardsFile()

AbsoluteQuantitationStandardsFile ( )

default

◆ ~AbsoluteQuantitationStandardsFile()

virtual ~AbsoluteQuantitationStandardsFile ( )

virtualdefault

Member Function Documentation

◆ extractRunFromLine_()

AbsoluteQuantitationStandards::runConcentration extractRunFromLine_	(	const StringList &	line,
		const std::map< String, Size > &	headers
	)		const

protected

Extract one runConcentration from a single line.

Any missing information is going to be filled with default data:

an empty string for String data
the value 0.0 for concentration values
the value 1.0 for dilution factor

The `headers` argument makes sure that the data is taken from the correct column/position in `line`.

Parameters

[in]	line	A list of strings each containing a column's info
[in]	headers	A mapping from header name to position in the StringList given in input

◆ load()

void load	(	const String &	filename,
		std::vector< AbsoluteQuantitationStandards::runConcentration > &	run_concentrations
	)		const

Load runConcentration data from a file and save it in memory.

An example of the format expected: > sample_name,component_name,IS_component_name,actual_concentration,IS_actual_concentration,concentration_units,dilution_factor > 150516_CM1_Level1,23dpg.23dpg_1.Light,23dpg.23dpg_1.Heavy,0,1,uM,1 > 150516_CM1_Level1,2mcit.2mcit_1.Light,2mcit.2mcit_1.Heavy,0,1,uM,1 > 150516_CM1_Level1,2obut.2obut_1.Light,2obut.2obut_1.Heavy,0,1,uM,1