Interface to the controlled vocabulary term list. More...

#include <OpenMS/METADATA/CVTermListInterface.h>

Inheritance diagram for CVTermListInterface:

Collaboration diagram for CVTermListInterface:

Constructors and Assignment
CVTermList *	cvt_ptr_

	CVTermListInterface ()

	CVTermListInterface (const CVTermListInterface &rhs)
	Copy constructor. More...

	CVTermListInterface (CVTermListInterface &&) noexcept
	Move constructor. More...

	~CVTermListInterface ()

CVTermListInterface &	operator= (const CVTermListInterface &rhs)
	Assignment operator. More...

CVTermListInterface &	operator= (CVTermListInterface &&) noexcept
	Move assignment operator. More...

bool	operator== (const CVTermListInterface &rhs) const
	equality operator More...

bool	operator!= (const CVTermListInterface &rhs) const
	inequality operator More...

void	replaceCVTerms (Map< String, std::vector< CVTerm > > &cv_terms)

void	setCVTerms (const std::vector< CVTerm > &terms)
	sets the CV terms More...

void	replaceCVTerm (const CVTerm &cv_term)
	replaces the specified CV term More...

void	replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession)
	replaces the specified CV terms using the given accession number More...

void	replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map)
	replaces all cv terms with a map (can be obtained via getCVTerms) More...

void	consumeCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map)
	merges the given map into the member map, no duplicate checking More...

const Map< String, std::vector< CVTerm > > &	getCVTerms () const
	returns the accession string of the term More...

void	addCVTerm (const CVTerm &term)
	adds a CV term More...

bool	hasCVTerm (const String &accession) const
	checks whether the term has a value More...

bool	empty () const

void	createIfNotExists_ ()

Additional Inherited Members
Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...

void	swap (MetaInfoInterface &rhs)
	Swap contents. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name, const DataValue &default_value=DataValue::EMPTY) const
	Returns the value corresponding to a string, or a default value (default: DataValue::EMPTY) if not found. More...

const DataValue &	getMetaValue (UInt index, const DataValue &default_value=DataValue::EMPTY) const
	Returns the value corresponding to an index, or a default value (default: DataValue::EMPTY) if not found. More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Detailed Description

Interface to the controlled vocabulary term list.

This class is an interface to CVTermList, providing the same interface and it can be used instead (direct plug-in). It can be used to inherit from instead of CVTermList. The advantage is that this class only stores a single pointer to a CVTermList which may be more efficient for an empty list than storing the whole object.

Constructor & Destructor Documentation

◆ CVTermListInterface() [1/3]

CVTermListInterface ( )

◆ CVTermListInterface() [2/3]

CVTermListInterface ( const CVTermListInterface & rhs )

Copy constructor.

◆ CVTermListInterface() [3/3]

CVTermListInterface ( CVTermListInterface && )

noexcept

Move constructor.

◆ ~CVTermListInterface()

~CVTermListInterface ( )

Member Function Documentation

◆ addCVTerm()

void addCVTerm ( const CVTerm & term )

adds a CV term

◆ consumeCVTerms()

void consumeCVTerms ( const Map< String, std::vector< CVTerm > > & cv_term_map )

merges the given map into the member map, no duplicate checking

◆ createIfNotExists_()

void createIfNotExists_ ( )

private

◆ empty()

bool empty ( ) const

◆ getCVTerms()

const Map<String, std::vector<CVTerm> >& getCVTerms ( ) const

returns the accession string of the term

◆ hasCVTerm()

bool hasCVTerm ( const String & accession ) const

checks whether the term has a value

◆ operator!=()

bool operator!= ( const CVTermListInterface & rhs ) const

inequality operator

◆ operator=() [1/2]

CVTermListInterface& operator= ( const CVTermListInterface & rhs )

Assignment operator.

◆ operator=() [2/2]

CVTermListInterface& operator= ( CVTermListInterface && )

noexcept

Move assignment operator.

◆ operator==()

bool operator== ( const CVTermListInterface & rhs ) const

equality operator

Referenced by Interpretation::operator==(), RetentionTime::operator==(), and TraMLProduct::operator==().

◆ replaceCVTerm()

void replaceCVTerm ( const CVTerm & cv_term )

replaces the specified CV term

◆ replaceCVTerms() [1/3]

void replaceCVTerms ( const Map< String, std::vector< CVTerm > > & cv_term_map )

replaces all cv terms with a map (can be obtained via getCVTerms)

◆ replaceCVTerms() [2/3]

void replaceCVTerms	(	const std::vector< CVTerm > &	cv_terms,
		const String &	accession
	)

replaces the specified CV terms using the given accession number

◆ replaceCVTerms() [3/3]

void replaceCVTerms ( Map< String, std::vector< CVTerm > > & cv_terms )

◆ setCVTerms()

void setCVTerms ( const std::vector< CVTerm > & terms )

sets the CV terms

Member Data Documentation

◆ cvt_ptr_

CVTermList* cvt_ptr_