FalseDiscoveryRate::DecoyStringHelper Class Reference

Finds decoy strings in ProteinIdentification runs. More...

#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>

Classes
struct	Result
	Finds the most common decoy string in the accessions of proteins. Checks for suffix and prefix and some common decoy strings. Only successful if more than 30% had a common string. More...

Static Public Member Functions
static Result	findDecoyString (const ProteinIdentification &proteins)

Detailed Description

Finds decoy strings in ProteinIdentification runs.

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Class Documentation

OpenMS::FalseDiscoveryRate::DecoyStringHelper::Result

struct OpenMS::FalseDiscoveryRate::DecoyStringHelper::Result

Finds the most common decoy string in the accessions of proteins. Checks for suffix and prefix and some common decoy strings. Only successful if more than 30% had a common string.

A result of the findDecoyString function

Parameters

proteins

Input proteins with accessions

Returns

A

Collaboration diagram for FalseDiscoveryRate::DecoyStringHelper::Result:

Class Members
bool	is_prefix	on success, was it a prefix or suffix
String	name	on success, what was the decoy string?
bool	success	did more than 30% of proteins have the *same* prefix or suffix

Member Function Documentation

findDecoyString()

static Result findDecoyString ( const ProteinIdentification &  proteins )

static