SwathTabWidget Class Reference

A multi-tabbed widget for the SwathWizard offering setting of parameters, input-file specification and running Swath and more. More...

#include <OpenMS/VISUAL/DIALOGS/SwathTabWidget.h>

Inheritance diagram for SwathTabWidget:

Collaboration diagram for SwathTabWidget:

Public Member Functions
	SwathTabWidget (QWidget *parent=nullptr)
	~SwathTabWidget ()
StringList	getMzMLInputFiles () const
QStringList	getPyProphetOutputFileNames () const

Private Slots
void	on_run_swath_clicked ()
void	on_edit_advanced_parameters_clicked ()
void	broadcastNewCWD_ (const QString &new_cwd)
	update the current working directory for all file input fields More...
void	on_btn_runPyProphet_clicked ()
void	on_btn_pyresults_clicked ()
void	on_pushButton_clicked ()

Private Member Functions
bool	findPythonScript_ (const String &path_to_python_exe, String &script_name)
void	updateSwathParamFromWidgets_ ()
	collect all parameters throughout the Wizard's controls and update 'swath_param_' More...
void	updateWidgetsfromSwathParam_ ()
	update Widgets given a param object More...
QString	getCurrentOutDir_ () const
	where to write OSW output and pyProphet output More...
std::vector< std::pair< String, bool > >	getPyProphetInputFiles () const
void	checkPyProphetInput_ ()
	check if input to pyProphet is already present in the output directory of OSW More...
void	writeLog_ (const QString &text, const QColor &color="#000000", bool new_section=false)
	fill osw_result_files_ according to the the currently specified input mzMLs More...
void	writeLog_ (const String &text, const QColor &color="#000000", bool new_section=false)
	convenient overload for String More...
bool	checkOSWInputReady_ ()

Private Attributes
Ui::SwathTabWidget *	ui
Param	swath_param_
	the global Swath parameters which will be passed to OpenSwathWorkflow.exe, once updated with parameters the Wizard holds separately More...
Param	swath_param_wizard_
	small selection of important parameters which the user can directly change in the Wizard More...
StringList	osw_result_files_
	list of .osw files produced by OSW which are currently available More...
ExternalProcessMBox	ep_
	to run external programs and pipe their output into our log More...

Friends
class	SwathGUILock

Detailed Description

A multi-tabbed widget for the SwathWizard offering setting of parameters, input-file specification and running Swath and more.

Constructor & Destructor Documentation

SwathTabWidget()

SwathTabWidget ( QWidget *  parent = nullptr )

explicit

~SwathTabWidget()

~SwathTabWidget

(

)

Member Function Documentation

broadcastNewCWD_

void broadcastNewCWD_ ( const QString &  new_cwd )

privateslot

update the current working directory for all file input fields

checkOSWInputReady_()

bool checkOSWInputReady_ ( )

private

Ensure all input widgets are filled with data by the user to run OpenSwathWorkflow If anything is missing: show a Messagebox and return false.

checkPyProphetInput_()

void checkPyProphetInput_ ( )

private

check if input to pyProphet is already present in the output directory of OSW

findPythonScript_()

bool findPythonScript_ ( const String &  path_to_python_exe, String &  script_name  )

private

find the path of a Script, given the location of python(.exe). E.g. pyprophet.exe or feature_alignment.py Returns true on success, with the full path in script_name

getCurrentOutDir_()

QString getCurrentOutDir_ ( ) const

private

where to write OSW output and pyProphet output

getMzMLInputFiles()

StringList getMzMLInputFiles

(

)

const

getPyProphetInputFiles()

std::vector<std::pair<String, bool> > getPyProphetInputFiles ( ) const

private

translate the current list of input mzMLs and the current output directory of OSW to a list of expected OSW output files == pyProphet input files The bool indicates if the file is already present

getPyProphetOutputFileNames()

QStringList getPyProphetOutputFileNames

(

)

const

on_btn_pyresults_clicked

void on_btn_pyresults_clicked ( )

privateslot

on_btn_runPyProphet_clicked

void on_btn_runPyProphet_clicked ( )

privateslot

on_edit_advanced_parameters_clicked

void on_edit_advanced_parameters_clicked ( )

privateslot

on_pushButton_clicked

void on_pushButton_clicked ( )

privateslot

on_run_swath_clicked

void on_run_swath_clicked ( )

privateslot

updateSwathParamFromWidgets_()

void updateSwathParamFromWidgets_ ( )

private

collect all parameters throughout the Wizard's controls and update 'swath_param_'

updateWidgetsfromSwathParam_()

void updateWidgetsfromSwathParam_ ( )

private

update Widgets given a param object

writeLog_() [1/2]

void writeLog_ ( const QString &  text, const QColor &  color = "#000000", bool  new_section = false  )

private

fill osw_result_files_ according to the the currently specified input mzMLs

append text to the log tab

Parameters

text	The text to write
new_section	Start a new block with a date and time

writeLog_() [2/2]

void writeLog_ ( const String &  text, const QColor &  color = "#000000", bool  new_section = false  )

private

convenient overload for String

Friends And Related Function Documentation

SwathGUILock

friend class SwathGUILock

friend

Member Data Documentation

ep_

ExternalProcessMBox ep_

private

to run external programs and pipe their output into our log

osw_result_files_

StringList osw_result_files_

private

list of .osw files produced by OSW which are currently available

swath_param_

Param swath_param_

private

the global Swath parameters which will be passed to OpenSwathWorkflow.exe, once updated with parameters the Wizard holds separately

swath_param_wizard_

Param swath_param_wizard_

private

small selection of important parameters which the user can directly change in the Wizard

ui

Ui::SwathTabWidget* ui

private