IsobaricQuantifierStatistics Class Reference

Statistics for quantitation performance and comparison of NNLS vs. naive method (aka matrix inversion) More...

#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.h>

Collaboration diagram for IsobaricQuantifierStatistics:

Public Member Functions
	IsobaricQuantifierStatistics ()
	Create stats object. More...
void	reset ()
	Reset statistics object. More...
	IsobaricQuantifierStatistics (const IsobaricQuantifierStatistics &other)
	Copy c'tor. More...
IsobaricQuantifierStatistics &	operator= (const IsobaricQuantifierStatistics &rhs)
	Assignment operator. More...

Public Attributes
Size	channel_count
	4plex, 6plex, or 8 plex?! More...
Size	iso_number_ms2_negative
	number of MS2 spectra where one or more channels had negative solution More...
Size	iso_number_reporter_negative
	number of channels where naive solution was negative More...
Size	iso_number_reporter_different
	number of channels >0 where naive solution was different; happens when naive solution is negative in other channels More...
double	iso_solution_different_intensity
	absolute intensity difference between both solutions (for channels > 0) More...
double	iso_total_intensity_negative
	only for spectra where naive solution is negative More...
Size	number_ms2_total
	total number of MS2 spectra More...
Size	number_ms2_empty
	number of empty MS2 (no reporters at all) More...
std::map< String, Size >	empty_channels
	Channel_ID -> Missing; indicating the number of empty channels from all MS2 scans, i.e., numbers are between number_ms2_empty and number_ms2_total. More...

Detailed Description

Statistics for quantitation performance and comparison of NNLS vs. naive method (aka matrix inversion)

Constructor & Destructor Documentation

IsobaricQuantifierStatistics() [1/2]

IsobaricQuantifierStatistics

(

)

Create stats object.

IsobaricQuantifierStatistics() [2/2]

IsobaricQuantifierStatistics

(

const IsobaricQuantifierStatistics &

other

)

Copy c'tor.

Member Function Documentation

operator=()

IsobaricQuantifierStatistics& operator=

(

const IsobaricQuantifierStatistics &

rhs

)

Assignment operator.

reset()

void reset

(

)

Reset statistics object.

Member Data Documentation

channel_count

Size channel_count

4plex, 6plex, or 8 plex?!

empty_channels

std::map<String, Size> empty_channels

Channel_ID -> Missing; indicating the number of empty channels from all MS2 scans, i.e., numbers are between number_ms2_empty and number_ms2_total.

iso_number_ms2_negative

Size iso_number_ms2_negative

number of MS2 spectra where one or more channels had negative solution

iso_number_reporter_different

Size iso_number_reporter_different

number of channels >0 where naive solution was different; happens when naive solution is negative in other channels

iso_number_reporter_negative

Size iso_number_reporter_negative

number of channels where naive solution was negative

iso_solution_different_intensity

double iso_solution_different_intensity

absolute intensity difference between both solutions (for channels > 0)

iso_total_intensity_negative

double iso_total_intensity_negative

only for spectra where naive solution is negative

number_ms2_empty

Size number_ms2_empty

number of empty MS2 (no reporters at all)

number_ms2_total

Size number_ms2_total

total number of MS2 spectra