File adapter for Kroenik (HardKloer sibling) files. More...

#include <OpenMS/FORMAT/KroenikFile.h>

Public Member Functions
	KroenikFile ()
	Default constructor. More...

virtual	~KroenikFile ()
	Destructor. More...

void	load (const String &filename, FeatureMap &feature_map)
	Loads a Kroenik file into a featureXML. More...

template<typename SpectrumType >
void	store (const String &filename, const SpectrumType &spectrum) const
	Stores a featureXML as a Kroenik file. More...

Detailed Description

File adapter for Kroenik (HardKloer sibling) files.

The first line is the header and contains the column names:
File, First Scan, Last Scan, Num of Scans, Charge, Monoisotopic Mass, Base Isotope Peak, Best Intensity, Summed Intensity, First RTime, Last RTime, Best RTime, Best Correlation, Modifications

Every subsequent line is a feature.

All properties in the file are converted to Feature properties, whereas "First Scan", "Last Scan", "Num of Scans" and "Modifications" are stored as metavalues with the following names "FirstScan", "LastScan", "NumOfScans" and "AveragineModifications".

The width in m/z of the overall convex hull of each feature is set to 3 Th in lack of a value provided by the Kroenik file.

Note: Kroenik files are Tab (\t) separated files.

Constructor & Destructor Documentation

◆ KroenikFile()

KroenikFile ( )

Default constructor.

◆ ~KroenikFile()

virtual ~KroenikFile ( )

virtual

Destructor.

Member Function Documentation

◆ load()

void load	(	const String &	filename,
		FeatureMap &	feature_map
	)

Loads a Kroenik file into a featureXML.

The content of the file is stored in features.

Exceptions

Exception::FileNotFound	is thrown if the file could not be opened
Exception::ParseError	is thrown if an error occurs during parsing

◆ store()

void store	(	const String &	filename,
		const SpectrumType &	spectrum
	)		const

inline

Stores a featureXML as a Kroenik file.

NOT IMPLEMENTED