MapAlignmentTransformer Class Reference

This class collects functions for applying retention time transformations to data structures. More...

#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h>

Static Public Member Functions
static void	transformRetentionTimes (PeakMap &msexp, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies the given transformation to a peak map. More...
static void	transformRetentionTimes (FeatureMap &fmap, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies the given transformation to a feature map. More...
static void	transformRetentionTimes (ConsensusMap &cmap, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies the given transformation to a consensus map. More...
static void	transformRetentionTimes (std::vector< PeptideIdentification > &pep_ids, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies the given transformation to peptide identifications. More...
static void	transformRetentionTimes (IdentificationData &id_data, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies the given transformation to input items in IdentificationData. More...

Static Private Member Functions
static void	applyToFeature_ (Feature &feature, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies a transformation to a feature. More...
static void	applyToBaseFeature_ (BaseFeature &feature, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies a transformation to a basic feature. More...
static void	applyToConsensusFeature_ (ConsensusFeature &feature, const TransformationDescription &trafo, bool store_original_rt=false)
	Applies a transformation to a consensus feature. More...
static bool	storeOriginalRT_ (MetaInfoInterface &meta_info, double original_rt)
	Stores the original RT in a meta value. More...

Detailed Description

This class collects functions for applying retention time transformations to data structures.

Member Function Documentation

applyToBaseFeature_()

static void applyToBaseFeature_ ( BaseFeature &  feature, const TransformationDescription &  trafo, bool  store_original_rt = false  )

staticprivate

Applies a transformation to a basic feature.

applyToConsensusFeature_()

static void applyToConsensusFeature_ ( ConsensusFeature &  feature, const TransformationDescription &  trafo, bool  store_original_rt = false  )

staticprivate

Applies a transformation to a consensus feature.

applyToFeature_()

static void applyToFeature_ ( Feature &  feature, const TransformationDescription &  trafo, bool  store_original_rt = false  )

staticprivate

Applies a transformation to a feature.

storeOriginalRT_()

static bool storeOriginalRT_ ( MetaInfoInterface &  meta_info, double  original_rt  )

staticprivate

Stores the original RT in a meta value.

The original RT is written to a meta value "original_RT", but only if that meta value doesn't already exist.

Returns

True if the meta value was written, false if it already exists.

transformRetentionTimes() [1/5]

static void transformRetentionTimes ( ConsensusMap &  cmap, const TransformationDescription &  trafo, bool  store_original_rt = false  )

static

Applies the given transformation to a consensus map.

transformRetentionTimes() [2/5]

static void transformRetentionTimes ( FeatureMap &  fmap, const TransformationDescription &  trafo, bool  store_original_rt = false  )

static

Applies the given transformation to a feature map.

transformRetentionTimes() [3/5]

static void transformRetentionTimes ( IdentificationData &  id_data, const TransformationDescription &  trafo, bool  store_original_rt = false  )

static

Applies the given transformation to input items in IdentificationData.

transformRetentionTimes() [4/5]

static void transformRetentionTimes ( PeakMap &  msexp, const TransformationDescription &  trafo, bool  store_original_rt = false  )

static

Applies the given transformation to a peak map.

transformRetentionTimes() [5/5]

static void transformRetentionTimes ( std::vector< PeptideIdentification > &  pep_ids, const TransformationDescription &  trafo, bool  store_original_rt = false  )

static

Applies the given transformation to peptide identifications.