MzTabMMetaData Class Reference

MztabM Metadata. More...

#include <OpenMS/FORMAT/MzTabM.h>

Collaboration diagram for MzTabMMetaData:

Public Member Functions
	MzTabMMetaData ()

Public Attributes
MzTabString	mz_tab_version
	MzTab-M Version. More...
MzTabString	mz_tab_id
	MzTab-M file id (e.g. repository-, local identifier) More...
MzTabString	title
	Title. More...
MzTabString	description
	Description. More...
std::map< Size, MzTabParameterList >	sample_processing
	List of parameters describing the sample processing/preparation/handling. More...
std::map< Size, MzTabInstrumentMetaData >	instrument
	List of parameters describing the instrument. More...
std::map< Size, MzTabSoftwareMetaData >	software
	Software used to analyze the data. More...
std::map< Size, MzTabString >	publication
	Associated publication(s) More...
std::map< Size, MzTabContactMetaData >	contact
	Contact name. More...
std::map< Size, MzTabString >	uri
	Pointing to file source (e.g. MetaboLights) More...
std::map< Size, MzTabString >	external_study_uri
	Pointing to an external file with more details about the study (e.g. ISA-TAB file) More...
MzTabParameter	quantification_method
	Quantification method used in the experiment. More...
std::map< Size, MzTabSampleMetaData >	sample
	Sample details. More...
std::map< Size, MzTabMMSRunMetaData >	ms_run
	MS run details. More...
std::map< Size, MzTabMAssayMetaData >	assay
	Assay details. More...
std::map< Size, MzTabMStudyVariableMetaData >	study_variable
	Study Variable details. More...
std::map< Size, MzTabParameter >	custom
	Custom parameters. More...
std::map< Size, MzTabCVMetaData >	cv
	Controlled Vocabulary details. More...
std::map< Size, MzTabMDatabaseMetaData >	database
	Database details. More...
std::map< Size, MzTabParameter >	derivatization_agent
	A description of derivatization agents applied to small molecules. More...
MzTabParameter	small_molecule_quantification_unit
	Description of the unit type used. More...
MzTabParameter	small_molecule_feature_quantification_unit
	Description of the unit type used. More...
MzTabParameter	small_molecule_identification_reliability
	Reliability of identification (4-level schema) More...
std::map< Size, MzTabParameter >	id_confidence_measure
	Confidence measures / scores. More...
std::vector< MzTabString >	colunit_small_molecule
	Defines the unit used for a specific column. More...
std::vector< MzTabString >	colunit_small_molecule_feature
	Defines the unit used for a specific column. More...
std::vector< MzTabString >	colunit_small_molecule_evidence
	Defines the unit used for a specific column. More...

Detailed Description

MztabM Metadata.

Constructor & Destructor Documentation

MzTabMMetaData()

MzTabMMetaData

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Member Data Documentation

assay

std::map<Size, MzTabMAssayMetaData> assay

Assay details.

colunit_small_molecule

std::vector<MzTabString> colunit_small_molecule

Defines the unit used for a specific column.

colunit_small_molecule_evidence

std::vector<MzTabString> colunit_small_molecule_evidence

Defines the unit used for a specific column.

colunit_small_molecule_feature

std::vector<MzTabString> colunit_small_molecule_feature

Defines the unit used for a specific column.

contact

std::map<Size, MzTabContactMetaData> contact

Contact name.

custom

std::map<Size, MzTabParameter> custom

Custom parameters.

cv

std::map<Size, MzTabCVMetaData> cv

Controlled Vocabulary details.

database

std::map<Size, MzTabMDatabaseMetaData> database

Database details.

derivatization_agent

std::map<Size, MzTabParameter> derivatization_agent

A description of derivatization agents applied to small molecules.

description

MzTabString description

Description.

external_study_uri

std::map<Size, MzTabString> external_study_uri

Pointing to an external file with more details about the study (e.g. ISA-TAB file)

id_confidence_measure

std::map<Size, MzTabParameter> id_confidence_measure

Confidence measures / scores.

instrument

std::map<Size, MzTabInstrumentMetaData> instrument

List of parameters describing the instrument.

ms_run

std::map<Size, MzTabMMSRunMetaData> ms_run

MS run details.

mz_tab_id

MzTabString mz_tab_id

MzTab-M file id (e.g. repository-, local identifier)

mz_tab_version

MzTabString mz_tab_version

MzTab-M Version.

publication

std::map<Size, MzTabString> publication

Associated publication(s)

quantification_method

MzTabParameter quantification_method

Quantification method used in the experiment.

sample

std::map<Size, MzTabSampleMetaData> sample

Sample details.

sample_processing

std::map<Size, MzTabParameterList> sample_processing

List of parameters describing the sample processing/preparation/handling.

small_molecule_feature_quantification_unit

MzTabParameter small_molecule_feature_quantification_unit

Description of the unit type used.

small_molecule_identification_reliability

MzTabParameter small_molecule_identification_reliability

Reliability of identification (4-level schema)

small_molecule_quantification_unit

MzTabParameter small_molecule_quantification_unit

Description of the unit type used.

software

std::map<Size, MzTabSoftwareMetaData> software

Software used to analyze the data.

study_variable

std::map<Size, MzTabMStudyVariableMetaData> study_variable

Study Variable details.

title

MzTabString title

Title.

uri

std::map<Size, MzTabString> uri

Pointing to file source (e.g. MetaboLights)