MzTabMetaData Class Reference

all meta data of a mzTab file. Please refer to specification for documentation. More...

#include <OpenMS/FORMAT/MzTab.h>

Collaboration diagram for MzTabMetaData:

Public Member Functions
	MzTabMetaData ()

Public Attributes
MzTabString	mz_tab_version
MzTabString	mz_tab_mode
MzTabString	mz_tab_type
MzTabString	mz_tab_id
MzTabString	title
MzTabString	description
std::map< Size, MzTabParameter >	protein_search_engine_score
std::map< Size, MzTabParameter >	peptide_search_engine_score
std::map< Size, MzTabParameter >	psm_search_engine_score
std::map< Size, MzTabParameter >	smallmolecule_search_engine_score
std::map< Size, MzTabParameter >	nucleic_acid_search_engine_score
std::map< Size, MzTabParameter >	oligonucleotide_search_engine_score
std::map< Size, MzTabParameter >	osm_search_engine_score
std::map< Size, MzTabParameterList >	sample_processing
std::map< Size, MzTabInstrumentMetaData >	instrument
std::map< Size, MzTabSoftwareMetaData >	software
MzTabParameterList	false_discovery_rate
std::map< Size, MzTabString >	publication
std::map< Size, MzTabContactMetaData >	contact
std::map< Size, MzTabString >	uri
std::map< Size, MzTabModificationMetaData >	fixed_mod
std::map< Size, MzTabModificationMetaData >	variable_mod
MzTabParameter	quantification_method
MzTabParameter	protein_quantification_unit
MzTabParameter	peptide_quantification_unit
MzTabParameter	small_molecule_quantification_unit
std::map< Size, MzTabMSRunMetaData >	ms_run
std::map< Size, MzTabParameter >	custom
std::map< Size, MzTabSampleMetaData >	sample
std::map< Size, MzTabAssayMetaData >	assay
std::map< Size, MzTabStudyVariableMetaData >	study_variable
std::map< Size, MzTabCVMetaData >	cv
std::vector< String >	colunit_protein
std::vector< String >	colunit_peptide
std::vector< String >	colunit_psm
std::vector< String >	colunit_small_molecule

Detailed Description

all meta data of a mzTab file. Please refer to specification for documentation.

Constructor & Destructor Documentation

MzTabMetaData()

MzTabMetaData

(

)

Member Data Documentation

assay

std::map<Size, MzTabAssayMetaData> assay

colunit_peptide

std::vector<String> colunit_peptide

colunit_protein

std::vector<String> colunit_protein

colunit_psm

std::vector<String> colunit_psm

colunit_small_molecule

std::vector<String> colunit_small_molecule

contact

std::map<Size, MzTabContactMetaData> contact

custom

std::map<Size, MzTabParameter> custom

cv

std::map<Size, MzTabCVMetaData> cv

description

MzTabString description

false_discovery_rate

MzTabParameterList false_discovery_rate

fixed_mod

std::map<Size, MzTabModificationMetaData> fixed_mod

instrument

std::map<Size, MzTabInstrumentMetaData> instrument

ms_run

std::map<Size, MzTabMSRunMetaData> ms_run

mz_tab_id

MzTabString mz_tab_id

mz_tab_mode

MzTabString mz_tab_mode

mz_tab_type

MzTabString mz_tab_type

mz_tab_version

MzTabString mz_tab_version

nucleic_acid_search_engine_score

std::map<Size, MzTabParameter> nucleic_acid_search_engine_score

oligonucleotide_search_engine_score

std::map<Size, MzTabParameter> oligonucleotide_search_engine_score

osm_search_engine_score

std::map<Size, MzTabParameter> osm_search_engine_score

peptide_quantification_unit

MzTabParameter peptide_quantification_unit

peptide_search_engine_score

std::map<Size, MzTabParameter> peptide_search_engine_score

protein_quantification_unit

MzTabParameter protein_quantification_unit

protein_search_engine_score

std::map<Size, MzTabParameter> protein_search_engine_score

psm_search_engine_score

std::map<Size, MzTabParameter> psm_search_engine_score

publication

std::map<Size, MzTabString> publication

quantification_method

MzTabParameter quantification_method

sample

std::map<Size, MzTabSampleMetaData> sample

sample_processing

std::map<Size, MzTabParameterList> sample_processing

small_molecule_quantification_unit

MzTabParameter small_molecule_quantification_unit

smallmolecule_search_engine_score

std::map<Size, MzTabParameter> smallmolecule_search_engine_score

software

std::map<Size, MzTabSoftwareMetaData> software

study_variable

std::map<Size, MzTabStudyVariableMetaData> study_variable

title

MzTabString title

uri

std::map<Size, MzTabString> uri

variable_mod

std::map<Size, MzTabModificationMetaData> variable_mod