File adapter for OMSSACSV files. More...

#include <OpenMS/FORMAT/OMSSACSVFile.h>

Public Member Functions
	OMSSACSVFile ()
	Default constructor. More...

virtual	~OMSSACSVFile ()
	Destructor. More...

void	load (const String &filename, ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &id_data) const
	Loads a OMSSA file. More...

Detailed Description

File adapter for OMSSACSV files.

The files contain the results of the OMSSA algorithm in a comma separated manner. This file adapter is able to load the data from such a file into the structures of OpenMS

Constructor & Destructor Documentation

◆ OMSSACSVFile()

OMSSACSVFile ( )

Default constructor.

◆ ~OMSSACSVFile()

virtual ~OMSSACSVFile ( )

virtual

Destructor.

Member Function Documentation

◆ load()

void load	(	const String &	filename,
		ProteinIdentification &	protein_identification,
		std::vector< PeptideIdentification > &	id_data
	)		const

Loads a OMSSA file.

Parameters

filename	the name of the file to read from
protein_identification	the protein ProteinIdentification data
id_data	the peptide ids of the file

Exceptions

FileNotFound	is thrown if the given file could not be found
ParseError	is thrown if the given file could not be parsed