OSWPeptidePrecursor Class Reference

A peptide with a charge state. More...

#include <OpenMS/DATASTRUCTURES/OSWData.h>

Collaboration diagram for OSWPeptidePrecursor:

Public Member Functions
	OSWPeptidePrecursor ()=default
	just a dummy feature to allow for acceptor output values etc More...
	OSWPeptidePrecursor (const String &seq, const short charge, const bool decoy, const float precursor_mz, std::vector< OSWPeakGroup > &&features)
	custom c'tor which fills all the members with data; all members are read-only More...
	OSWPeptidePrecursor (const OSWPeptidePrecursor &rhs)=default
	Copy c'tor. More...
OSWPeptidePrecursor &	operator= (const OSWPeptidePrecursor &rhs)=default
	assignment operator More...
	OSWPeptidePrecursor (OSWPeptidePrecursor &&rhs)=default
	move c'tor More...
OSWPeptidePrecursor &	operator= (OSWPeptidePrecursor &&rhs)=default
	move assignment operator More...
const String &	getSequence () const
	the peptide sequence (incl. mods) More...
short	getCharge () const
	precursor charge More...
bool	isDecoy () const
	is this a decoy feature (from a decoy protein) More...
float	getPCMz () const
	m/z of this charged peptide More...
const std::vector< OSWPeakGroup > &	getFeatures () const
	candidate explanations More...

Private Attributes
String	seq_
short	charge_ {0}
bool	decoy_ {false}
float	precursor_mz_ {0}
std::vector< OSWPeakGroup >	features_

Detailed Description

A peptide with a charge state.

An OSWProtein has one or more OSWPeptidePrecursors.

The OSWPeptidePrecursor contains multiple candidate features (peak groups) of type OSWPeakGroup, only one of which is usually true.

Constructor & Destructor Documentation

OSWPeptidePrecursor() [1/4]

OSWPeptidePrecursor ( )

default

just a dummy feature to allow for acceptor output values etc

OSWPeptidePrecursor() [2/4]

OSWPeptidePrecursor	(	const String &	seq,
		const short	charge,
		const bool	decoy,
		const float	precursor_mz,
		std::vector< OSWPeakGroup > &&	features
	)

custom c'tor which fills all the members with data; all members are read-only

OSWPeptidePrecursor() [3/4]

OSWPeptidePrecursor ( const OSWPeptidePrecursor &  rhs )

default

Copy c'tor.

OSWPeptidePrecursor() [4/4]

OSWPeptidePrecursor ( OSWPeptidePrecursor &&  rhs )

default

move c'tor

Member Function Documentation

getCharge()

short getCharge ( ) const

inline

precursor charge

getFeatures()

const std::vector<OSWPeakGroup>& getFeatures ( ) const

inline

candidate explanations

getPCMz()

float getPCMz ( ) const

inline

m/z of this charged peptide

getSequence()

const String& getSequence ( ) const

inline

the peptide sequence (incl. mods)

isDecoy()

bool isDecoy ( ) const

inline

is this a decoy feature (from a decoy protein)

operator=() [1/2]

OSWPeptidePrecursor& operator= ( const OSWPeptidePrecursor &  rhs )

default

assignment operator

operator=() [2/2]

OSWPeptidePrecursor& operator= ( OSWPeptidePrecursor &&  rhs )

default

move assignment operator

Member Data Documentation

charge_

short charge_ {0}

private

decoy_

bool decoy_ {false}

private

features_

std::vector<OSWPeakGroup> features_

private

precursor_mz_

float precursor_mz_ {0}

private

seq_

String seq_

private