SpecArrayFile Class Reference

File adapter for SpecArray (.pepList) files. More...

#include <OpenMS/FORMAT/SpecArrayFile.h>

Public Member Functions
	SpecArrayFile ()
	Default constructor. More...
virtual	~SpecArrayFile ()
	Destructor. More...
template<typename FeatureMapType >
void	load (const String &filename, FeatureMapType &feature_map)
	Loads a SpecArray file into a featureXML. More...
template<typename SpectrumType >
void	store (const String &filename, const SpectrumType &spectrum) const
	Stores a featureXML as a SpecArray file. More...

Detailed Description

File adapter for SpecArray (.pepList) files.

The first line is the header and contains the column names:
m/z rt(min) snr charge intensity

Every subsequent line is a feature. Entries are separated by Tab (\t).

Constructor & Destructor Documentation

SpecArrayFile()

SpecArrayFile

(

)

Default constructor.

~SpecArrayFile()

virtual ~SpecArrayFile ( )

virtual

Destructor.

Member Function Documentation

load()

void load ( const String &  filename, FeatureMapType &  feature_map  )

inline

Loads a SpecArray file into a featureXML.

The content of the file is stored in features.

Exceptions

Exception::FileNotFound	is thrown if the file could not be opened
Exception::ParseError	is thrown if an error occurs during parsing

References TextFile::begin(), TextFile::end(), BaseFeature::setCharge(), Peak2D::setIntensity(), MetaInfoInterface::setMetaValue(), Peak2D::setMZ(), Peak2D::setRT(), String::split(), OpenMS::StringUtils::toDouble(), and OpenMS::StringUtils::toInt().

store()

void store ( const String &  filename, const SpectrumType &  spectrum  ) const

inline

Stores a featureXML as a SpecArray file.

NOT IMPLEMENTED

Exceptions

Exception::UnableToCreateFile

is thrown if the file could not be created