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OpenMS
2.8.0
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This is the complete list of members for MRMScoring, including all inherited members.
| calcLibraryScore(OpenSwath::IMRMFeature *mrmfeature, const std::vector< TransitionType > &transitions, double &correlation, double &norm_manhattan, double &manhattan, double &dotprod, double &spectral_angle, double &rmsd) | MRMScoring | static |
| calcMIPrecursorCombinedScore() | MRMScoring | |
| calcMIPrecursorContrastScore() | MRMScoring | |
| calcMIPrecursorScore() | MRMScoring | |
| calcMIScore() | MRMScoring | |
| calcMIWeightedScore(const std::vector< double > &normalized_library_intensity) | MRMScoring | |
| calcRTScore(const PeptideType &peptide, double normalized_experimental_rt) | MRMScoring | static |
| calcSeparateMIContrastScore() | MRMScoring | |
| calcSeparateSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators) | MRMScoring | static |
| calcSeparateXcorrContrastCoelutionScore() | MRMScoring | |
| calcSeparateXcorrContrastShapeScore() | MRMScoring | |
| calcSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators) | MRMScoring | static |
| calcXcorrCoelutionScore() | MRMScoring | |
| calcXcorrCoelutionWeightedScore(const std::vector< double > &normalized_library_intensity) | MRMScoring | |
| calcXcorrContrastCoelutionScore() | MRMScoring | |
| calcXcorrContrastShapeScore() | MRMScoring | |
| calcXcorrPrecursorCoelutionScore() | MRMScoring | |
| calcXcorrPrecursorCombinedCoelutionScore() | MRMScoring | |
| calcXcorrPrecursorCombinedShapeScore() | MRMScoring | |
| calcXcorrPrecursorContrastCoelutionScore() | MRMScoring | |
| calcXcorrPrecursorContrastShapeScore() | MRMScoring | |
| calcXcorrPrecursorShapeScore() | MRMScoring | |
| calcXcorrShapeScore() | MRMScoring | |
| calcXcorrShapeWeightedScore(const std::vector< double > &normalized_library_intensity) | MRMScoring | |
| FeatureType typedef | MRMScoring | |
| getMIContrastMatrix() const | MRMScoring | |
| getMIMatrix() const | MRMScoring | |
| getMIPrecursorCombinedMatrix() const | MRMScoring | |
| getMIPrecursorContrastMatrix() const | MRMScoring | |
| getXCorrContrastMatrix() const | MRMScoring | |
| getXCorrMatrix() const | MRMScoring | |
| getXCorrPrecursorCombinedMatrix() const | MRMScoring | |
| getXCorrPrecursorContrastMatrix() const | MRMScoring | |
| initializeMIContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids_set1, const std::vector< std::string > &native_ids_set2) | MRMScoring | |
| initializeMIMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids) | MRMScoring | |
| initializeMIPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids) | MRMScoring | |
| initializeMIPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids) | MRMScoring | |
| initializeMIPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids) | MRMScoring | |
| initializeXCorrContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids_set1, const std::vector< std::string > &native_ids_set2) | MRMScoring | |
| initializeXCorrMatrix(const std::vector< std::vector< double > > &data) | MRMScoring | |
| initializeXCorrMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids) | MRMScoring | |
| initializeXCorrPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids) | MRMScoring | |
| initializeXCorrPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids) | MRMScoring | |
| initializeXCorrPrecursorContrastMatrix(const std::vector< std::vector< double > > &data_precursor, const std::vector< std::vector< double > > &data_fragments) | MRMScoring | |
| initializeXCorrPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids) | MRMScoring | |
| mi_contrast_matrix_ | MRMScoring | private |
| mi_matrix_ | MRMScoring | private |
| mi_precursor_combined_matrix_ | MRMScoring | private |
| mi_precursor_contrast_matrix_ | MRMScoring | private |
| mi_precursor_matrix_ | MRMScoring | private |
| PeptideType typedef | MRMScoring | |
| ProteinType typedef | MRMScoring | |
| SpectrumType typedef | MRMScoring | |
| TransitionType typedef | MRMScoring | |
| xcorr_contrast_matrix_ | MRMScoring | private |
| xcorr_contrast_matrix_max_peak_sec_ | MRMScoring | private |
| xcorr_matrix_ | MRMScoring | private |
| xcorr_matrix_max_peak_ | MRMScoring | private |
| xcorr_matrix_max_peak_sec_ | MRMScoring | private |
| xcorr_precursor_combined_matrix_ | MRMScoring | private |
| xcorr_precursor_contrast_matrix_ | MRMScoring | private |
| xcorr_precursor_matrix_ | MRMScoring | private |
| XCorrArrayType typedef | MRMScoring | |
| XCorrMatrixType typedef | MRMScoring |
1.9.1
