#include <OpenMS/config.h>
#include <string>

Include dependency graph for Constants.h:

This graph shows which files directly or indirectly include this file:

Namespaces
	OpenMS
	Main OpenMS namespace.

	OpenMS::Constants
	Mathematical and physical constants namespace.

	OpenMS::Constants::UserParam

Variables
const std::string	CONCAT_PEPTIDE = "concatenated_peptides"

const std::string	LOCALIZED_MODIFICATIONS_USERPARAM = "localized_modifications"

const std::string	MERGED_CHROMATOGRAM_MZS = "merged_chromatogram_mzs"

const std::string	PRECURSOR_ERROR_PPM_USERPARAM = "precursor_mz_error_ppm"

const std::string	FRAGMENT_ERROR_MEDIAN_PPM_USERPARAM = "fragment_mz_error_median_ppm"

const std::string	FRAGMENT_ERROR_PPM_USERPARAM = "fragment_mass_error_ppm"

const std::string	FRAGMENT_ERROR_DA_USERPARAM = "fragment_mass_error_da"

const std::string	FRAGMENT_ANNOTATION_USERPARAM = "fragment_annotation"

const std::string	PSM_EXPLAINED_ION_CURRENT_USERPARAM = "PSM_explained_ion_current"

const std::string	MATCHED_PREFIX_IONS_FRACTION = "matched_prefix_ions_fraction"

const std::string	MATCHED_SUFFIX_IONS_FRACTION = "matched_suffix_ions_fraction"

const std::string	SPECTRUM_REFERENCE = "spectrum_reference"

const std::string	ID_MERGE_INDEX = "id_merge_index"

const std::string	TARGET_DECOY = "target_decoy"

const std::string	DELTA_SCORE = "delta_score"

const std::string	ISOTOPE_ERROR = "isotope_error"

const std::string	OPENPEPXL_SCORE = "OpenPepXL:score"

const std::string	OPENPEPXL_BETA_SEQUENCE = "sequence_beta"

const std::string	OPENPEPXL_BETA_ACCESSIONS = "accessions_beta"

const std::string	OPENPEPXL_XL_POS1 = "xl_pos1"

const std::string	OPENPEPXL_XL_POS2 = "xl_pos2"

const std::string	OPENPEPXL_XL_POS1_PROT = "xl_pos1_protein"

const std::string	OPENPEPXL_XL_POS2_PROT = "xl_pos2_protein"

const std::string	OPENPEPXL_XL_TYPE = "xl_type"

const std::string	OPENPEPXL_XL_RANK = "xl_rank"

const std::string	OPENPEPXL_XL_MOD = "xl_mod"

const std::string	OPENPEPXL_XL_MASS = "xl_mass"

const std::string	OPENPEPXL_XL_TERM_SPEC_ALPHA = "xl_term_spec_alpha"

const std::string	OPENPEPXL_XL_TERM_SPEC_BETA = "xl_term_spec_beta"

const std::string	OPENPEPXL_HEAVY_SPEC_RT = "spec_heavy_RT"

const std::string	OPENPEPXL_HEAVY_SPEC_MZ = "spec_heavy_MZ"

const std::string	OPENPEPXL_HEAVY_SPEC_REF = "spectrum_reference_heavy"

const std::string	OPENPEPXL_TARGET_DECOY_ALPHA = "xl_target_decoy_alpha"

const std::string	OPENPEPXL_TARGET_DECOY_BETA = "xl_target_decoy_beta"

const std::string	OPENPEPXL_BETA_PEPEV_PRE = "BetaPepEv:pre"

const std::string	OPENPEPXL_BETA_PEPEV_POST = "BetaPepEv:post"

const std::string	OPENPEPXL_BETA_PEPEV_START = "BetaPepEv:start"

const std::string	OPENPEPXL_BETA_PEPEV_END = "BetaPepEv:end"

const std::string	XFDR_FDR = "XFDR:FDR"

const std::string	IIMN_BEST_ION = "best ion"

const std::string	IIMN_ADDUCT_PARTNERS = "partners"

const std::string	IIMN_ROW_ID = "row ID"

const std::string	IIMN_ANNOTATION_NETWORK_NUMBER = "annotation network number"

const std::string	ADDUCT_GROUP = "Group"

const std::string	IIMN_LINKED_GROUPS = "LinkedGroups"

const std::string	DC_CHARGE_ADDUCTS = "dc_charge_adducts"

const std::string	NUM_OF_MASSTRACES = "num_of_masstraces"

const std::string	NUM_OF_DATAPOINTS = "num_of_datapoints"

const std::string	MSM_METABOLITE_NAME = "Metabolite_Name"

const std::string	MSM_INCHI_STRING = "Inchi_String"

const std::string	MSM_SMILES_STRING = "SMILES_String"

const std::string	MSM_PRECURSOR_ADDUCT = "Precursor_Ion"

const std::string	MSM_SUM_FORMULA = "Sum_Formula"

Mathematical constants.
const double	PI = 3.14159265358979323846
	PI. More...

const double	E = 2.718281828459045235
	Euler's number - base of the natural logarithm. More...

double	EPSILON = 1e-6

Chemical/physical constants.
const double	ELEMENTARY_CHARGE = 1.60217738E-19

const double	e0 = ELEMENTARY_CHARGE
	Elementary charge (alias) More...

const double	ELECTRON_MASS = 9.1093897E-31

const double	ELECTRON_MASS_U = 1.0 / 1822.8885020477

const double	PROTON_MASS = 1.6726230E-27

const double	PROTON_MASS_U = 1.0072764667710

const double	C13C12_MASSDIFF_U = 1.0033548378

const double	ISOTOPE_MASSDIFF_55K_U = 1.002371

const double	NEUTRON_MASS = 1.6749286E-27

const double	NEUTRON_MASS_U = 1.00866491566

const double	AVOGADRO = 6.0221367E+23

const double	NA = AVOGADRO

const double	MOL = AVOGADRO

const double	BOLTZMANN = 1.380657E-23

const double	k = BOLTZMANN

const double	PLANCK = 6.6260754E-34

const double	h = PLANCK

const double	GAS_CONSTANT = NA * k

const double	R = GAS_CONSTANT

const double	FARADAY = NA * e0

const double	F = FARADAY

const double	BOHR_RADIUS = 5.29177249E-11

const double	a0 = BOHR_RADIUS

const double	VACUUM_PERMITTIVITY = 8.85419E-12

const double	VACUUM_PERMEABILITY = (4 * PI * 1E-7)

const double	SPEED_OF_LIGHT = 2.99792458E+8

const double	c = SPEED_OF_LIGHT

const double	GRAVITATIONAL_CONSTANT = 6.67259E-11

const double	FINE_STRUCTURE_CONSTANT = 7.29735E-3

Conversion factors
const double	DEG_PER_RAD = 57.2957795130823209

const double	RAD_PER_DEG = 0.0174532925199432957

const double	MM_PER_INCH = 25.4

const double	M_PER_FOOT = 3.048

const double	JOULE_PER_CAL = 4.184

const double	CAL_PER_JOULE = (1 / 4.184)

User parameters in/from Sirius annotated mzMLs
E.g., when running SiriusAdapter with annotation output
const std::string	SIRIUS_MZ = "mz"

const std::string	SIRIUS_EXACTMASS = "exact_mass"

const std::string	SIRIUS_EXPLANATION = "explanation"

const std::string	SIRIUS_SCORE = "score"

const std::string	SIRIUS_PEAKMZ = "peak_mz"

const std::string	SIRIUS_ANNOTATED_SUMFORMULA = "annotated_sumformula"

const std::string	SIRIUS_ANNOTATED_ADDUCT = "annotated_adduct"

const std::string	SIRIUS_DECOY = "decoy"

const std::string	SIRIUS_FEATURE_ID = "feat_id"

Namespaces

Variables