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OpenMS
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Convenience functions to construct appealing fragment annotation strings and store them as PeptideHit::PeakAnnotation. More...
#include <OpenMS/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.h>
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struct | FragmentAnnotationDetail_ |
Single fragment annotation. More... | |
Static Public Member Functions | |
static String | getAnnotatedImmoniumIon (char c, const String &fragment_shift_name) |
static std::vector< PeptideHit::PeakAnnotation > | fragmentAnnotationDetailsToPHFA (const String &ion_type, const std::map< Size, std::vector< FragmentAnnotationDetail_ > > &ion_annotation_details) |
conversion of RNPxl annotations to PeptideHit::PeakAnnotation More... | |
static std::vector< PeptideHit::PeakAnnotation > | shiftedToPHFA (const std::map< String, std::set< std::pair< String, double > > > &shifted_ions) |
static String | shiftedIonsToString (const std::vector< PeptideHit::PeakAnnotation > &as) |
static void | addShiftedPeakFragmentAnnotation_ (const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &shifted_b_ions, const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &shifted_y_ions, const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &shifted_a_ions, const std::vector< PeptideHit::PeakAnnotation > &shifted_immonium_ions, const std::vector< PeptideHit::PeakAnnotation > &annotated_marker_ions, const std::vector< PeptideHit::PeakAnnotation > &annotated_precursor_ions, std::vector< PeptideHit::PeakAnnotation > &fas) |
Convenience functions to construct appealing fragment annotation strings and store them as PeptideHit::PeakAnnotation.
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conversion of RNPxl annotations to PeptideHit::PeakAnnotation
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