Base class for sample treatments (Digestion, Modification, Tagging, ...) More...

#include <OpenMS/METADATA/SampleTreatment.h>

Inheritance diagram for SampleTreatment:

Collaboration diagram for SampleTreatment:

Public Member Functions
	SampleTreatment (const String &type)
	Constructor. More...

	SampleTreatment (const SampleTreatment &)=default
	Copy constructor. More...

	SampleTreatment (SampleTreatment &&)=default
	Move constructor. More...

virtual	~SampleTreatment ()
	Destructor. More...

SampleTreatment &	operator= (const SampleTreatment &)=default
	Assignment operator. More...

SampleTreatment &	operator= (SampleTreatment &&) &=default
	Move assignment operator. More...

virtual bool	operator== (const SampleTreatment &rhs) const
	Equality operator. More...

const String &	getType () const
	return the treatment type More...

const String &	getComment () const
	returns the description of the sample treatment More...

void	setComment (const String &comment)
	sets the description of the sample treatment More...

virtual SampleTreatment *	clone () const =0
	A clone method. More...

Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...

void	swap (MetaInfoInterface &rhs)
	Swap contents. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (const String &name, const DataValue &default_value) const
	Returns the value corresponding to a string, or a default value (e.g.: DataValue::EMPTY) if not found. More...

const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to the index, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (UInt index, const DataValue &default_value) const
	Returns the value corresponding to the index, or a default value (e.g.: DataValue::EMPTY) if not found. More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Protected Attributes
String	type_

String	comment_

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Private Member Functions
	SampleTreatment ()
	Default constructor hidden to force setting of a type. More...

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Detailed Description

Base class for sample treatments (Digestion, Modification, Tagging, ...)

Virtual base class for all sample treatments.

The type of the treatment can be determined through the getType() method.

Constructor & Destructor Documentation

◆ SampleTreatment() [1/4]

SampleTreatment ( const String & type )

explicit

Constructor.

Use a unique type string for each treatment type

◆ SampleTreatment() [2/4]

SampleTreatment ( const SampleTreatment & )

default

Copy constructor.

Note: Do not forget to call it when you derive a class from SampleTreatment!

◆ SampleTreatment() [3/4]

SampleTreatment ( SampleTreatment && )

default

Move constructor.

◆ ~SampleTreatment()

virtual ~SampleTreatment ( )

virtual

Destructor.

◆ SampleTreatment() [4/4]

SampleTreatment ( )

private

Default constructor hidden to force setting of a type.

Member Function Documentation

◆ clone()

virtual SampleTreatment* clone ( ) const

pure virtual

A clone method.

clone method that creates a copy and returns a pointer (base class pointer). Used to copy sample treatments when only a pointer to this base class is available.

Implemented in Tagging, Modification, and Digestion.

◆ getComment()

const String& getComment ( ) const

returns the description of the sample treatment

◆ getType()

const String& getType ( ) const

return the treatment type

The type_ has to be set in the default constructor. It is used to determine the kind of sample treatment, when only a pointer to this base class is available.

◆ operator=() [1/2]

SampleTreatment& operator= ( const SampleTreatment & )

default

Assignment operator.

Note: Do not forget to call it when you derive a class from SampleTreatment!

◆ operator=() [2/2]

SampleTreatment& operator= ( SampleTreatment && ) &

default

Move assignment operator.

◆ operator==()

virtual bool operator== ( const SampleTreatment & rhs ) const

virtual

Equality operator.

The equality operators of derived classes also take a SampleTreatment reference as argument. They check the type and cast the reference to the right type if the type matches.

Note: Do not forget to call it when you derive a class from SampleTreatment!

Reimplemented in Tagging, Modification, and Digestion.

◆ setComment()

void setComment ( const String & comment )

sets the description of the sample treatment

Member Data Documentation

◆ comment_

String comment_

protected

◆ type_

String type_

protected

Public Member Functions

Protected Attributes

Private Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ SampleTreatment() [1/4]

◆ SampleTreatment() [2/4]

◆ SampleTreatment() [3/4]

◆ ~SampleTreatment()

◆ SampleTreatment() [4/4]

Member Function Documentation

◆ clone()

◆ getComment()

◆ getType()

◆ operator=() [1/2]

◆ operator=() [2/2]

◆ operator==()

◆ setComment()

Member Data Documentation

◆ comment_

◆ type_