Product ion interpretation. More...

#include <OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h>

Inheritance diagram for Interpretation:

Collaboration diagram for Interpretation:

Public Types
typedef Residue::ResidueType	IonType
	Interpretation IonType. More...

Public Member Functions
	Interpretation ()

Operators assignment, equality, inequality
bool	operator== (const Interpretation &rhs) const

bool	operator!= (const Interpretation &rhs) const

Public Member Functions inherited from CVTermListInterface
	CVTermListInterface ()

	CVTermListInterface (const CVTermListInterface &rhs)
	Copy constructor. More...

	CVTermListInterface (CVTermListInterface &&) noexcept
	Move constructor. More...

	~CVTermListInterface ()

CVTermListInterface &	operator= (const CVTermListInterface &rhs)
	Assignment operator. More...

CVTermListInterface &	operator= (CVTermListInterface &&) noexcept
	Move assignment operator. More...

bool	operator== (const CVTermListInterface &rhs) const
	equality operator More...

bool	operator!= (const CVTermListInterface &rhs) const
	inequality operator More...

void	replaceCVTerms (std::map< String, std::vector< CVTerm > > &cv_terms)

void	setCVTerms (const std::vector< CVTerm > &terms)
	sets the CV terms More...

void	replaceCVTerm (const CVTerm &cv_term)
	replaces the specified CV term More...

void	replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession)
	replaces the specified CV terms using the given accession number More...

void	replaceCVTerms (const std::map< String, std::vector< CVTerm > > &cv_term_map)
	replaces all cv terms with a map (can be obtained via getCVTerms) More...

void	consumeCVTerms (const std::map< String, std::vector< CVTerm > > &cv_term_map)
	merges the given map into the member map, no duplicate checking More...

const std::map< String, std::vector< CVTerm > > &	getCVTerms () const
	returns the accession string of the term More...

void	addCVTerm (const CVTerm &term)
	adds a CV term More...

bool	hasCVTerm (const String &accession) const
	checks whether the term has a value More...

bool	empty () const

Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...

void	swap (MetaInfoInterface &rhs)
	Swap contents. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (const String &name, const DataValue &default_value) const
	Returns the value corresponding to a string, or a default value (e.g.: DataValue::EMPTY) if not found. More...

const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to the index, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (UInt index, const DataValue &default_value) const
	Returns the value corresponding to the index, or a default value (e.g.: DataValue::EMPTY) if not found. More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Public Attributes
unsigned char	ordinal
	MS:1000903 : product ion series ordinal (e.g. 8 for a y8 ion) More...

unsigned char	rank
	MS:1000926 : product interpretation rank (e.g. 1 for the most likely rank) More...

IonType	iontype
	which type of ion (b/y/z/ ...), see Residue::ResidueType More...

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Detailed Description

Product ion interpretation.

The interpretation of a MS product ion (mostly has functions for peptides at the moment). Can store information about the ion type,

Member Typedef Documentation

◆ IonType

typedef Residue::ResidueType IonType

Interpretation IonType.

Constructor & Destructor Documentation

◆ Interpretation()

Interpretation ( )

inline

Member Function Documentation

◆ operator!=()

bool operator!= ( const Interpretation & rhs ) const

inline

References OpenMS::Internal::operator==().

◆ operator==()

bool operator== ( const Interpretation & rhs ) const

inline

References Interpretation::iontype, CVTermListInterface::operator==(), Interpretation::ordinal, and Interpretation::rank.

Member Data Documentation

◆ iontype

IonType iontype

which type of ion (b/y/z/ ...), see Residue::ResidueType

Referenced by Interpretation::operator==().

◆ ordinal

unsigned char ordinal

MS:1000903 : product ion series ordinal (e.g. 8 for a y8 ion)

Referenced by Interpretation::operator==().

◆ rank

unsigned char rank

MS:1000926 : product interpretation rank (e.g. 1 for the most likely rank)

Referenced by Interpretation::operator==().

Public Types

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ IonType

Constructor & Destructor Documentation

◆ Interpretation()

Member Function Documentation

◆ operator!=()

◆ operator==()

Member Data Documentation

◆ iontype

◆ ordinal

◆ rank