OpenMS
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#include <OpenMS/config.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>
#include <OpenMS/DATASTRUCTURES/ListUtilsIO.h>
#include <OpenMS/FORMAT/EDTAFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/MSChromatogram.h>
#include <OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h>
#include <OpenMS/FILTERING/SMOOTHING/GaussFilter.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h>
#include <functional>
#include <numeric>