- t -

t : RANSACParam
t_star_ : LinearRegression
tab_bar_ : TOPPASBase , TOPPViewBase
tab_ptrs_ : DataSelectionTabs
tab_width_ : FuzzyStringComparator
table_steps_ : IsotopeWavelet
table_widget_ : SpectraIDViewTab
tableRows : QcMLFile::Attachment
tables_splitter_ : SpectraIDViewTab
tag_ : CVMappingFile , MascotXMLHandler , MzIdentMLHandler , MzQuantMLHandler , PTMXMLHandler , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , OMSSAXMLFile , QcMLFile , XTandemXMLFile
tag_count_ : InspectInfile
taggingmass_shift_ : TaggingVisualizer
taggingvariant_ : TaggingVisualizer
tags : Param::ParamEntry , ParameterInformation
tags_open_ : MascotXMLHandler
tailing_factor : PeakIntegrator::PeakShapeMetrics
target : FileMapping , LogStreamBuf::StreamStruct , SiriusFragmentAnnotation::SiriusTargetDecoySpectra
target_ : ListUtils::DoubleTolerancePredicate_
target_compound_ref : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
target_decoy : ConsensusIDAlgorithm::HitInfo
target_decoy_spectra : MetaboTargetedAssay::CompoundTargetDecoyPair
target_dspec_for_dummy_calcualtion_ : FLASHDeconvAlgorithm
target_dummy_type_ : FLASHDeconvAlgorithm , PeakGroup
target_file_number : MetaboTargetedAssay::TargetDecoyGroup
target_in_param_ : TOPPASEdge
target_index : MetaboTargetedAssay::TargetDecoyGroup
target_input_param_indices_ : TOPPASIOMappingDialog
target_intensity : PrecursorPurity::PurityScores
target_mass_bins_ : FLASHDeconvAlgorithm
target_mono_masses_ : FLASHDeconvAlgorithm
target_mz : MetaboTargetedAssay::TargetDecoyGroup
target_peak_count : PrecursorPurity::PurityScores
target_prob : IsoSpecTotalProbWrapper
target_product_masses : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
target_rt : MetaboTargetedAssay::TargetDecoyGroup
target_rts_ : FeatureFinderAlgorithmMetaboIdent
targets_ : TargetedExperiment
tau_ : EGHTraceFitter
taxid : MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
taxon_ : XTandemInfile
taxonomy : DBSearchParam , ProteinIdentification::SearchParameters
taxonomy_ : MascotInfile , ProteinIdentificationVisualizer
taxonomy_file_ : XTandemInfile
td_ : AcqusHandler , ToolDescriptionHandler
td_vec_ : ToolDescriptionHandler
tde_ : ToolDescriptionHandler
techrepmixture_ : MSstatsFile::MSstatsTMTLine_
temp_ : BaseVisualizer< ObjectType >
temp_dir_ : File::TempDir
temperature_ : Digestion , HPLC
temporary_annotations_ : TVIdentificationViewController
temporary_files_ : File
term_name_ : CVMappingTerm
term_spec_ : PepXMLFile::AminoAcidModification , ResidueModification , Ribonucleotide
term_spec_alpha : OPXLDataStructs::ProteinProteinCrossLink
term_spec_beta : OPXLDataStructs::ProteinProteinCrossLink
term_specs_ : UnimodXMLHandler
terminal_series_match_ratio_ : SpectrumAnnotator
terminus_ : PepXMLFile::AminoAcidModification
terms_ : ControlledVocabulary
test_mode_ : TOPPBase
text_ : Annotation1DItem
text_box_content_ : Plot1DCanvas
text_fail : ToolExternalDetails
text_finish : ToolExternalDetails
text_offset_ : Annotation1DVerticalLineItem
text_startup : ToolExternalDetails
tgt_begin_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
tgt_end_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
tgts : IDBoostGraph::ProteinGroup
th_ : BernNorm
theoretical_int : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
theoretical_mass : Compound
theoretical_mz : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
theoretical_mz_ : AccurateMassSearchResult
theoretical_neutral_mass : MzTabMSmallMoleculeSectionRow
theoretical_pattern : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
threads_active_ : TOPPASScene
threads_outer_loop_ : OpenSwathWorkflowBase
three_letter_code_ : Residue
three_prime_ : NASequence
three_prime_gain_ : DigestionEnzymeRNA , RNaseDigestion
thresh_p_ : MassExplainer
threshold_ : ClusterHierarchical , MapAlignmentAlgorithmSpectrumAlignment , ThresholdMower
threshold_cvs : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
threshold_ups : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
TIC : MorpheusScore::Result
tic_weight_ : TargetedSpectraExtractor
tick_level_ : AxisWidget
ticks_ : Annotation1DDistanceItem
time_limit : LPWrapper::SolverParam
timeout_ : MascotRemoteQuery
timepoint_vali_ : GradientVisualizer
timepoints_ : GradientVisualizer
timers_ : FileWatcher
times_ : Gradient
timestamp : LogStreamBuf::LogCacheStruct
tissue : MzTabSampleMetaData
title : Citation , MzTabMetaData , MzTabMMetaData
tmp_boxes_ : IsotopeWaveletTransform< PeakType >
tmp_dir_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
tmp_ms_file_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
tmp_neighbors_ : QTCluster::BulkData
tmp_out_dir_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
tmp_path_ : FLASHDeconvWizardBase , SwathWizardBase , TOPPASBase , TOPPASScene , TOPPASToolVertex
to_ : MascotRemoteQuery , TOPPASEdge
TOF_ : MassAnalyzerVisualizer
TOF_total_path_length_ : MassAnalyzer
tol_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
tol_ppm_ : InternalCalibration::CalibrantStats_
tolerance_ : FLASHDeconvAlgorithm , IDScoreSwitcherAlgorithm , ListUtils::DoubleTolerancePredicate_
tolerance_mz_ : TwoDOptimization
tolerance_stdev_box_ : Fitter1D
too_few_peptides : PeptideAndProteinQuant::Statistics
tool_bar_ : TOPPASBase , TOPPViewBase
tool_bar_1d_ : TOPPViewBase
tool_bar_2d_cons_ : TOPPViewBase
tool_bar_2d_feat_ : TOPPViewBase
tool_bar_2d_ident_ : TOPPViewBase
tool_bar_2d_peak_ : TOPPViewBase
tool_desc_ : ToolsDialog
tool_description_ : TOPPBase
tool_map_ : ToolsDialog
tool_name_ : TOPPASToolConfigDialog , TOPPBase
tool_param_futures_ : TVToolDiscovery
tool_params_ : ToolsDialog , TVToolDiscovery
tool_ready_ : TOPPASToolVertex
tool_scanner_ : ToolsDialog , TOPPViewBase
tool_type_ : TOPPASToolConfigDialog
toolhandler_test_ : TOPPBase
tools_combo_ : ToolsDialog
tools_external_ : ToolHandler
tools_external_loaded_ : ToolHandler
tools_internal_ : ToolHandler
tools_internal_loaded_ : ToolHandler
tools_tree_view_ : TOPPASBase
TOP_MARGIN : Plot1DCanvas
top_matches_to_report_ : TargetedSpectraExtractor
topFD_max_peak_count_ : FLASHDeconvSpectrumFile
topFD_min_peak_count_ : FLASHDeconvSpectrumFile
topNmatch_fragmenterrors_ : SpectrumAnnotator
topo_nr_ : TOPPASVertex
topo_sort_marked_ : TOPPASVertex
topp_ : TOPPViewBase
topp_ini_file_ : TOPPBase
topp_processes_queue_ : TOPPASScene
total_abundances : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
total_current : OPXLDataStructs::CrossLinkSpectrumMatch
total_distinct_peptides : PeptideAndProteinQuant::ProteinData
total_features : PeptideAndProteinQuant::Statistics
total_intensity : PrecursorPurity::PurityScores
total_nr_peaks : TwoDOptimization::Data
total_peptides : PeptideAndProteinQuant::Statistics
total_psm_counts : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
total_size_ : MSExperiment
total_weight_reciprocal_ : FeatureDistance
total_width : PeakIntegrator::PeakShapeMetrics
total_xic : OpenSwath_Scores
tr_gr_id_ : MRMTransitionGroup< ChromatogramType, TransitionType >
tr_table : ToolExternalDetails
trace_ : Param::ParamIterator
trace_peaks_ : MassTrace
trace_termination_criterion_ : MassTraceDetection
trace_termination_outliers_ : MassTraceDetection
trace_tolerance_ : FeatureFinderAlgorithmPicked
traces_ptr : TraceFitter::ModelData
trafo_ : FeatureFinderAlgorithmMetaboIdent
trafo_external_ : FeatureFinderIdentificationAlgorithm
train_count_trans_all_ : HiddenMarkovModel
train_emission_prob_ : HiddenMarkovModel
trained_trans_ : HiddenMarkovModel
training_steps_count_ : HiddenMarkovModel
trans_ : HiddenMarkovModel
trans_intens_ : IsotopeWaveletTransform< PeakType >::TransSpectrum
trans_x_ : Plot3DOpenGLCanvas
trans_y_ : Plot3DOpenGLCanvas
transformation_model_ : AbsoluteQuantitationMethod
transformation_model_params_ : AbsoluteQuantitationMethod
transformations_ : MapAlignmentAlgorithmKD
transID_to_index_ : OSWData
transition_count : TargetedExperiment::SummaryStatistics
transition_flags_ : ReactionMonitoringTransition
transition_ids_ : OSWPeakGroup
transition_map_ : ConfidenceScoring , MRMTransitionGroup< ChromatogramType, TransitionType >
transition_name : TransitionTSVFile::TSVTransition , LightTransition
transition_quality_score : MetaboTargetedAssay
transitions : LightTargetedExperiment , Peptide
transitions_ : MRMTransitionGroup< ChromatogramType, TransitionType > , OSWData , TargetedExperiment
traversed : ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry
treatmentcomment_ : DigestionVisualizer , ModificationVisualizer , TaggingVisualizer
treatments_ : Sample
treatmenttype_ : DigestionVisualizer , ModificationVisualizer , TaggingVisualizer
tree_ : ParamEditor
tree_id_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
tree_pos : ACSpawn , ACTrieState
tree_score : SiriusMzTabWriter::SiriusAdapterHit
treeview_ : MetaDataBrowser
trgroup_ : TransitionGroupOpenMS< SpectrumT, TransitionT >
trie_ : ACTrie
trie_db_pos_length_ : InspectOutfile
trie_delimiter_ : InspectOutfile
trim_right_cutoff_ : ExtendedIsotopeModel , IsotopeModel
trimmed_left : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
tsg_param_ : TOPPViewPrefDialog
tv : TOPPASScene::TOPPProcess
tv_ : DataSelectionTabs , TVControllerBase
two_d_optimization_ : PeakPickerCWT
type : LayerDataBase , ParameterInformation , PeakShape , TOPPASToolVertex::IOInfo
type_ : ChromatogramSettings , ListEditorDelegate , ListTable , IonDetector , IonDetectorVisualizer , ListEditor , MassAnalyzer , MassAnalyzerVisualizer , OSWTransition , ProgressLogger , SampleTreatment , SpectrumSettings , SpectrumSettingsVisualizer , TOPPASToolVertex
type_list_ : FileTypeList
type_to_better_ : IDScoreSwitcherAlgorithm
type_to_str_ : IDScoreSwitcherAlgorithm
typeName_ : ListEditorDelegate
types : ConsensusIDAlgorithm::HitInfo , FileTypeList::FilterElements_ , ToolDescriptionInternal