OpenMS
BinnedSpectrumCompareFunctor Class Referenceabstract

Base class for compare functors of BinnedSpectra. More...

#include <OpenMS/COMPARISON/BinnedSpectrumCompareFunctor.h>

Inheritance diagram for BinnedSpectrumCompareFunctor:
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Collaboration diagram for BinnedSpectrumCompareFunctor:
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Public Member Functions

 BinnedSpectrumCompareFunctor ()
 default constructor More...
 
 BinnedSpectrumCompareFunctor (const BinnedSpectrumCompareFunctor &source)
 copy constructor More...
 
 ~BinnedSpectrumCompareFunctor () override
 destructor More...
 
BinnedSpectrumCompareFunctoroperator= (const BinnedSpectrumCompareFunctor &source)
 assignment operator More...
 
virtual double operator() (const BinnedSpectrum &spec1, const BinnedSpectrum &spec2) const =0
 function call operator, calculates the similarity of the given arguments More...
 
virtual double operator() (const BinnedSpectrum &spec) const =0
 function call operator, calculates self similarity More...
 
- Public Member Functions inherited from DefaultParamHandler
 DefaultParamHandler (const String &name)
 Constructor with name that is displayed in error messages. More...
 
 DefaultParamHandler (const DefaultParamHandler &rhs)
 Copy constructor. More...
 
virtual ~DefaultParamHandler ()
 Destructor. More...
 
DefaultParamHandleroperator= (const DefaultParamHandler &rhs)
 Assignment operator. More...
 
virtual bool operator== (const DefaultParamHandler &rhs) const
 Equality operator. More...
 
void setParameters (const Param &param)
 Sets the parameters. More...
 
const ParamgetParameters () const
 Non-mutable access to the parameters. More...
 
const ParamgetDefaults () const
 Non-mutable access to the default parameters. More...
 
const StringgetName () const
 Non-mutable access to the name. More...
 
void setName (const String &name)
 Mutable access to the name. More...
 
const std::vector< String > & getSubsections () const
 Non-mutable access to the registered subsections. More...
 

Additional Inherited Members

- Static Public Member Functions inherited from DefaultParamHandler
static void writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")
 Writes all parameters to meta values. More...
 
- Protected Member Functions inherited from DefaultParamHandler
virtual void updateMembers_ ()
 This method is used to update extra member variables at the end of the setParameters() method. More...
 
void defaultsToParam_ ()
 Updates the parameters after the defaults have been set in the constructor. More...
 
- Protected Attributes inherited from DefaultParamHandler
Param param_
 Container for current parameters. More...
 
Param defaults_
 Container for default parameters. This member should be filled in the constructor of derived classes! More...
 
std::vector< Stringsubsections_
 Container for registered subsections. This member should be filled in the constructor of derived classes! More...
 
String error_name_
 Name that is displayed in error messages during the parameter checking. More...
 
bool check_defaults_
 If this member is set to false no checking if parameters in done;. More...
 
bool warn_empty_defaults_
 If this member is set to false no warning is emitted when defaults are empty;. More...
 

Detailed Description

Base class for compare functors of BinnedSpectra.

BinnedSpectrumCompareFunctor classes return a value for a pair of BinnedSpectrum objects (or a single one with itself). Ideally the value should reflect the similarity of the pair. For methods of computing the similarity see the documentation of the concrete functors. Functors normalized in the range [0,1] are identifiable at the set "normalized" parameter of the ParameterHandler

Constructor & Destructor Documentation

◆ BinnedSpectrumCompareFunctor() [1/2]

default constructor

◆ BinnedSpectrumCompareFunctor() [2/2]

copy constructor

◆ ~BinnedSpectrumCompareFunctor()

destructor

Member Function Documentation

◆ operator()() [1/2]

virtual double operator() ( const BinnedSpectrum spec) const
pure virtual

function call operator, calculates self similarity

Implemented in BinnedSumAgreeingIntensities, BinnedSpectralContrastAngle, and BinnedSharedPeakCount.

◆ operator()() [2/2]

virtual double operator() ( const BinnedSpectrum spec1,
const BinnedSpectrum spec2 
) const
pure virtual

function call operator, calculates the similarity of the given arguments

Implemented in BinnedSumAgreeingIntensities, BinnedSpectralContrastAngle, and BinnedSharedPeakCount.

◆ operator=()

assignment operator