NeighborSeq::NeighborStats Struct Reference

Statistics of how many neighbors were found per reference peptide. More...

#include <OpenMS/ANALYSIS/ID/NeighborSeq.h>

Collaboration diagram for NeighborSeq::NeighborStats:

Public Member Functions
int	total () const
	Sum of all 4 categories. More...
String	unfindable () const
	Number of reference peptides that contain an 'X' (unknown amino acid), formatted as 'X (Y%)'. More...
String	noNB () const
	Number of reference peptides that had no neighbors, formatted as 'X (Y%)'. More...
String	oneNB () const
	Number of reference peptides that had exactly one neighbor, formatted as 'X (Y%)'. More...
String	multiNB () const
	Number of reference peptides that had multiple neighbors, formatted as 'X (Y%)'. More...

Public Attributes
NeigborStats_members
Mutually exclusive categories of how many neighbors were found per reference peptide
int	unfindable_peptides = 0
	how many ref-peptides contain an 'X' (unknown amino acid) and thus cannot be searched for neighbors More...
int	findable_no_neighbors = 0
	how many peptides had no neighbors? More...
int	findable_one_neighbor = 0
	how many peptides had exactly one neighbor? More...
int	findable_multiple_neighbors = 0
	how many peptides had multiple neighbors? More...

Detailed Description

Statistics of how many neighbors were found per reference peptide.

Member Function Documentation

multiNB()

String multiNB ( ) const

inline

Number of reference peptides that had multiple neighbors, formatted as 'X (Y%)'.

noNB()

String noNB ( ) const

inline

Number of reference peptides that had no neighbors, formatted as 'X (Y%)'.

oneNB()

String oneNB ( ) const

inline

Number of reference peptides that had exactly one neighbor, formatted as 'X (Y%)'.

total()

int total ( ) const

inline

Sum of all 4 categories.

unfindable()

String unfindable ( ) const

inline

Number of reference peptides that contain an 'X' (unknown amino acid), formatted as 'X (Y%)'.

Member Data Documentation

findable_multiple_neighbors

int findable_multiple_neighbors = 0

how many peptides had multiple neighbors?

findable_no_neighbors

int findable_no_neighbors = 0

how many peptides had no neighbors?

findable_one_neighbor

int findable_one_neighbor = 0

how many peptides had exactly one neighbor?

unfindable_peptides

int unfindable_peptides = 0

how many ref-peptides contain an 'X' (unknown amino acid) and thus cannot be searched for neighbors