PeptDeepUtils.h File Reference

#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <string>
#include <vector>

Include dependency graph for PeptDeepUtils.h:

Go to the source code of this file.

Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::ML

Functions
OpenMS::Int64	getAAIndex (char aa)
	Maps amino acid characters to 1-based token indices for PeptDeep models.
void	validatePeptide (const std::string &peptide)
	Validates a peptide sequence for PeptDeep inference. Throws explicit OpenMS exceptions if the sequence is invalid, too long, or contains modifications.
std::vector< float >	generateUnmodifiedModXTensor (size_t batch_size, size_t sequence_length)
	Generates an empty mod_x tensor for unmodified peptides. Resolves to a flat vector of zeros of size (batch_size * sequence_length * 109).

Variables
constexpr int64_t	PEPTDEEP_MOD_ELEMENTS = 109
const std::string	PEPTDEEP_VALID_AAS = "ACDEFGHIKLMNPQRSTVWY"