MzPAF.h File Reference

#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CHEMISTRY/EmpiricalFormula.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/METADATA/PeptideHit.h>
#include <OpenMS/OpenMSConfig.h>
#include <iosfwd>
#include <optional>
#include <utility>
#include <vector>

Include dependency graph for MzPAF.h:

Go to the source code of this file.

Classes
struct	MzPAFNeutralLoss
	Neutral loss in an mzPAF annotation. More...
struct	MzPAFMassDelta
	Mass delta in an mzPAF annotation. More...
struct	MzPAFAnnotation
	A single mzPAF peak annotation. More...
struct	MzPAFPeakAnnotations
	Multiple mzPAF annotations for a single peak. More...
class	MzPAFParseError
	Parse error for mzPAF notation. More...
class	MzPAF
	Parser and writer for mzPAF (Peak Annotation Format) notation. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

Enumerations
enum class	MzPAFIonSeries {   A , B , C , X ,   Y , Z , PRECURSOR , IMMONIUM ,   INTERNAL , REPORTER , FORMULA , NAMED ,   UNKNOWN }
	Ion series types for mzPAF peak annotations. More...
enum class	MzPAFDeltaUnit { DALTON , PPM }
	Unit for mass delta values in mzPAF annotations. More...
enum class	MzPAFErrorCode {   UNEXPECTED_CHARACTER , UNCLOSED_BRACKET , INVALID_ION_SERIES , INVALID_NUMBER ,   INVALID_FORMULA , INVALID_CHARGE , INVALID_DELTA , INVALID_CONFIDENCE ,   EMPTY_INPUT , UNEXPECTED_END_OF_INPUT , INTERNAL_ERROR }
	Error codes for mzPAF parsing errors. More...

Functions
std::ostream &	operator<< (std::ostream &os, const MzPAFAnnotation &ann)
	Output operator for MzPAFAnnotation (for testing/debugging)
const char *	mzPAFErrorCodeToString (MzPAFErrorCode code)
	Convert error code to human-readable string.