#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/CHEMISTRY/ModifiedPeptideGenerator.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/DATASTRUCTURES/StringView.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/ANALYSIS/ID/OpenSearchModificationAnalysis.h>
#include <vector>

Include dependency graph for PeptideSearchEngineFIAlgorithm.h:

This graph shows which files directly or indirectly include this file:

Classes
class	PeptideSearchEngineFIAlgorithm
	Fragment-index-based peptide database search algorithm (experimental). More...

struct	PeptideSearchEngineFIAlgorithm::SearchResult
	Comprehensive search result including modification analysis. More...

struct	PeptideSearchEngineFIAlgorithm::AnnotatedHit_
	Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

Class Documentation

◆ OpenMS::PeptideSearchEngineFIAlgorithm::SearchResult

struct OpenMS::PeptideSearchEngineFIAlgorithm::SearchResult

Comprehensive search result including modification analysis.

This structure contains all outputs from an open search including:

Standard protein and peptide identifications
Delta mass statistics table (histogram of mass shifts)
PTM statistics table (mapped modifications with residue analysis)

Collaboration diagram for PeptideSearchEngineFIAlgorithm::SearchResult:

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Class Members
ExitCodes	exit_code = ExitCodes::EXECUTION_OK
bool	is_open_search = false
OpenSearchAnalysisResult	modification_analysis
PeptideIdentificationList	peptide_ids
vector< ProteinIdentification >	protein_ids

Classes

Namespaces

Class Documentation

◆ OpenMS::PeptideSearchEngineFIAlgorithm::SearchResult