Inheritance diagram for DIAChromHandler:

Collaboration diagram for DIAChromHandler:

Public Member Functions
	DIAChromHandler ()=default

	~DIAChromHandler () override=default

std::vector< MSChromatogram >	collectIrtChromatogramsForIrt (const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::LightTargetedExperiment &irt_transitions, const Param &mrm_mapping_param, const ChromExtractParams &cp, const TransformationDescription &trafo=TransformationDescription(), bool pasef=false, bool load_into_memory=false) override
	Collect iRT chromatograms from the swath maps and try to map them to the provided iRT transitions.

std::vector< MSChromatogram >	extractAndMapChromatogramsForTransitions (const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::LightTargetedExperiment &transition_exp, const ChromExtractParams &cp, const Param &mrm_mapping_param) override
	Extract (or select) chromatograms for the given transitions and return mapped & filtered chromatograms.

Public Member Functions inherited from IChromatogramHandler
	IChromatogramHandler ()=default

virtual	~IChromatogramHandler ()=default

Additional Inherited Members
Static Public Member Functions inherited from IChromatogramHandler
static std::unique_ptr< IChromatogramHandler >	createDefault ()
	Factory: create the default handler (currently SRM/MRM-based)

Constructor & Destructor Documentation

◆ DIAChromHandler()

DIAChromHandler ( )

default

~DIAChromHandler ( )

overridedefault

std::vector< MSChromatogram > collectIrtChromatogramsForIrt	(	const std::vector< OpenSwath::SwathMap > &	swath_maps,
		const OpenSwath::LightTargetedExperiment &	irt_transitions,
		const Param &	mrm_mapping_param,
		const ChromExtractParams &	cp,
		const TransformationDescription &	trafo = `TransformationDescription()`,
		bool	pasef = `false`,
		bool	load_into_memory = `false`
	)

overridevirtual

Collect iRT chromatograms from the swath maps and try to map them to the provided iRT transitions.

std::vector< MSChromatogram > extractAndMapChromatogramsForTransitions	(	const std::vector< OpenSwath::SwathMap > &	swath_maps,
		const OpenSwath::LightTargetedExperiment &	transition_exp,
		const ChromExtractParams &	cp,
		const Param &	mrm_mapping_param
	)

overridevirtual

Extract (or select) chromatograms for the given transitions and return mapped & filtered chromatograms.