ModomicsJSONDataProvider Class Reference

Loads Ribonucleotide data from a Modomics JSON file. More...

#include <OpenMS/CHEMISTRY/ModomicsJSONDataProvider.h>

Inheritance diagram for ModomicsJSONDataProvider:

Collaboration diagram for ModomicsJSONDataProvider:

Public Member Functions
	ModomicsJSONDataProvider (const String &filename)
std::vector< RibonucleotideEntry >	loadRibonucleotides () override
	Load ribonucleotides from whatever source this provider wraps.
Public Member Functions inherited from RibonucleotideDataProvider
virtual	~RibonucleotideDataProvider ()=default

Private Attributes
String	filename_

Detailed Description

Loads Ribonucleotide data from a Modomics JSON file.

Parses the JSON format used by the Modomics database (https://www.genesilico.pl/modomics/api/modifications) and returns ribonucleotide entries as RibonucleotideEntry objects.

Constructor & Destructor Documentation

ModomicsJSONDataProvider()

ModomicsJSONDataProvider ( const String &  filename )

explicit

Parameters

filename

Path to a Modomics JSON file (resolved via File::find)

Member Function Documentation

loadRibonucleotides()

std::vector< RibonucleotideEntry > loadRibonucleotides ( )

overridevirtual

Load ribonucleotides from whatever source this provider wraps.

Returns

Vector of ribonucleotide entries with ownership transferred to caller.

Note

Providers may only be called once. Subsequent calls may return empty results.

Implements RibonucleotideDataProvider.

Member Data Documentation

filename_

String filename_

private