PRT - Protein section (Table based) More...
#include <OpenMS/FORMAT/MzTab.h>
Classes | |
| struct | RowCompare |
| Comparison operator for sorting rows. More... | |
Public Member Functions | |
| MzTabProteinSectionRow () | |
PRT - Protein section (Table based)
| MzTabString accession |
The protein’s accession.
Referenced by MzTabProteinSectionRow::RowCompare::operator()().
| MzTabStringList ambiguity_members |
Alternative protein identifications.
| std::map<Size, MzTabDouble> best_search_engine_score |
best_search_engine_score[1-n]
| MzTabDouble coverage |
(0-1) Amount of protein sequence identified.
| MzTabString database |
Name of the protein database.
| MzTabString database_version |
String Version of the protein database.
| MzTabString description |
Human readable description (i.e. the name)
| MzTabStringList go_terms |
List of GO terms for the protein.
| MzTabModificationList modifications |
Modifications identified in the protein.
| std::map<Size, MzTabInteger> num_peptides_distinct_ms_run |
| std::map<Size, MzTabInteger> num_peptides_unique_ms_run |
| std::map<Size, MzTabInteger> num_psms_ms_run |
| std::vector<MzTabOptionalColumnEntry> opt_ |
Optional Columns must start with “opt_”
| std::map<Size, MzTabDouble> protein_abundance_assay |
| std::map<Size, MzTabDouble> protein_abundance_std_error_study_variable |
| std::map<Size, MzTabDouble> protein_abundance_stdev_study_variable |
| std::map<Size, MzTabDouble> protein_abundance_study_variable |
| MzTabInteger reliability |
| MzTabParameterList search_engine |
Search engine(s) identifying the protein.
| std::map<Size, std::map<Size, MzTabDouble> > search_engine_score_ms_run |
search_engine_score[index1]_ms_run[index2]
| MzTabString species |
Human readable name of the species.
| MzTabInteger taxid |
NEWT taxonomy for the species.
| MzTabString uri |
Location of the protein’s source entry.
1.9.1 
