PEFFVariantComplex Struct Reference

Represents a complex PEFF variant (insertion, deletion, or substitution of multiple amino acids). More...

#include <OpenMS/FORMAT/PEFFFile.h>

Collaboration diagram for PEFFVariantComplex:

Public Member Functions
	PEFFVariantComplex ()=default
	PEFFVariantComplex (Size start, Size end, const String &repl, const String &tag="", UInt aid=std::numeric_limits< UInt >::max())
bool	operator== (const PEFFVariantComplex &rhs) const

Public Attributes
Size	start_position {0}
	1-based start position
Size	end_position {0}
	1-based end position
String	replacement
	Replacement sequence (empty = deletion)
String	optional_tag
	Optional tag (last component of annotation tuple)
UInt	annotation_id {std::numeric_limits<UInt>::max()}
	Optional annotation identifier, max() = not set.

Detailed Description

Represents a complex PEFF variant (insertion, deletion, or substitution of multiple amino acids).

Parsed from \VariantComplex annotations.

Constructor & Destructor Documentation

PEFFVariantComplex() [1/2]

PEFFVariantComplex ( )

default

PEFFVariantComplex() [2/2]

PEFFVariantComplex ( Size  start, Size  end, const String &  repl, const String &  tag = "", UInt  aid = std::numeric_limits<UInt>::max()  )

inline

Member Function Documentation

operator==()

bool operator== ( const PEFFVariantComplex &  rhs ) const

inline

References PEFFVariantComplex::annotation_id, PEFFVariantComplex::end_position, PEFFVariantComplex::optional_tag, PEFFVariantComplex::replacement, and PEFFVariantComplex::start_position.

Member Data Documentation

annotation_id

UInt annotation_id {std::numeric_limits<UInt>::max()}

Optional annotation identifier, max() = not set.

Referenced by PEFFVariantComplex::operator==().

end_position

Size end_position {0}

1-based end position

Referenced by PEFFVariantComplex::operator==().

optional_tag

String optional_tag

Optional tag (last component of annotation tuple)

Referenced by PEFFVariantComplex::operator==().

replacement

String replacement

Replacement sequence (empty = deletion)

Referenced by PEFFVariantComplex::operator==().

start_position

Size start_position {0}

1-based start position

Referenced by PEFFVariantComplex::operator==().