PEFFVariantSimple Struct Reference

Represents a simple PEFF variant (single amino acid substitution). More...

#include <OpenMS/FORMAT/PEFFFile.h>

Collaboration diagram for PEFFVariantSimple:

Public Member Functions
	PEFFVariantSimple ()=default
	PEFFVariantSimple (Size pos, char aa, const String &tag="", UInt aid=std::numeric_limits< UInt >::max())
bool	operator== (const PEFFVariantSimple &rhs) const

Public Attributes
Size	position {0}
	1-based position
char	variant_aa {'\0'}
	Variant amino acid.
String	optional_tag
	Optional tag (last component of annotation tuple)
UInt	annotation_id {std::numeric_limits<UInt>::max()}
	Optional annotation identifier, max() = not set.

Detailed Description

Represents a simple PEFF variant (single amino acid substitution).

Parsed from \VariantSimple annotations.

Constructor & Destructor Documentation

PEFFVariantSimple() [1/2]

PEFFVariantSimple ( )

default

PEFFVariantSimple() [2/2]

PEFFVariantSimple ( Size  pos, char  aa, const String &  tag = "", UInt  aid = std::numeric_limits<UInt>::max()  )

inline

Member Function Documentation

operator==()

bool operator== ( const PEFFVariantSimple &  rhs ) const

inline

References PEFFVariantSimple::annotation_id, PEFFVariantSimple::optional_tag, PEFFVariantSimple::position, and PEFFVariantSimple::variant_aa.

Member Data Documentation

annotation_id

UInt annotation_id {std::numeric_limits<UInt>::max()}

Optional annotation identifier, max() = not set.

Referenced by PEFFVariantSimple::operator==().

optional_tag

String optional_tag

Optional tag (last component of annotation tuple)

Referenced by PEFFVariantSimple::operator==().

position

Size position {0}

1-based position

Referenced by PEFFVariantSimple::operator==().

variant_aa

char variant_aa {'\0'}

Variant amino acid.

Referenced by PEFFVariantSimple::operator==().