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MetaProSIP.cpp File Reference
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/ModificationsDB.h>
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/CHEMISTRY/Element.h>
#include <OpenMS/CHEMISTRY/ElementDB.h>
#include <OpenMS/MATH/STATISTICS/StatisticFunctions.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h>
#include <OpenMS/MATH/MISC/NonNegativeLeastSquaresSolver.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/FORMAT/TextFile.h>
#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h>
#include <OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h>
#include <OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h>
#include <OpenMS/MATH/MISC/CubicSpline2d.h>
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h>
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h>
#include <boost/math/distributions/normal.hpp>
#include <QtCore/QStringList>
#include <QtCore/QFile>
#include <QtCore/QDir>
#include <QtCore/QFileInfo>
#include <QtCore/QProcess>
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <map>
#include <math.h>

Classes

struct  RateScorePair
 
struct  SIPIncorporation
 datastructure for reporting an incorporation event More...
 
struct  SIPPeptide
 datastructure for reporting a peptide with one or more incorporation rates comparator for vectors of SIPPeptides based on their size. Used to sort by group size. More...
 
struct  SizeLess
 
struct  SequenceLess
 
struct  RIALess
 
class  MetaProSIPInterpolation
 
class  MetaProSIPClustering
 
class  MetaProSIPReporting
 
class  MetaProSIPDecomposition
 
class  MetaProSIPXICExtraction
 
class  RIntegration
 
class  TOPPMetaProSIP
 

Typedefs

typedef map< double, doubleMapRateToScoreType
 
typedef pair< double, vector< double > > IsotopePattern
 
typedef vector< IsotopePatternIsotopePatterns
 

Functions

int main (int argc, const char **argv)
 

Typedef Documentation

◆ IsotopePattern

typedef pair<double, vector<double> > IsotopePattern

◆ IsotopePatterns

◆ MapRateToScoreType

Function Documentation

◆ main()

int main ( int  argc,
const char **  argv 
)

References TOPPBase::main().


OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:05 using doxygen 1.8.13