FragmentAnnotationHelper Class Reference

Static Public Member Functions
static String	getAnnotatedImmoniumIon (char c, const String &fragment_shift_name)
static String	fragmentAnnotationDetailsToString (const String &ion_type, map< Size, vector< FragmentAnnotationDetail_ > > ion_annotation_details)
static std::vector< PeptideHit::PeakAnnotation >	fragmentAnnotationDetailsToPHFA (const String &ion_type, map< Size, vector< FragmentAnnotationDetail_ > > ion_annotation_details)
static std::vector< PeptideHit::PeakAnnotation >	shiftedToPHFA (const map< String, set< pair< String, double > > > &shifted_ions)
static String	shiftedIonsToString (const vector< PeptideHit::PeakAnnotation > &as)

Member Function Documentation

fragmentAnnotationDetailsToPHFA()

static std::vector<PeptideHit::PeakAnnotation> fragmentAnnotationDetailsToPHFA ( const String &  ion_type, map< Size, vector< FragmentAnnotationDetail_ > >  ion_annotation_details  )

inlinestatic

References PeptideHit::PeakAnnotation::annotation, PeptideHit::PeakAnnotation::charge, PeptideHit::PeakAnnotation::intensity, and PeptideHit::PeakAnnotation::mz.

Referenced by RNPxlSearch::postScoreHits_().

fragmentAnnotationDetailsToString()

static String fragmentAnnotationDetailsToString ( const String &  ion_type, map< Size, vector< FragmentAnnotationDetail_ > >  ion_annotation_details  )

inlinestatic

References String::number().

Referenced by RNPxlSearch::postScoreHits_().

getAnnotatedImmoniumIon()

static String getAnnotatedImmoniumIon ( char  c, const String &  fragment_shift_name  )

inlinestatic

Referenced by RNPxlSearch::postScoreHits_().

shiftedIonsToString()

static String shiftedIonsToString ( const vector< PeptideHit::PeakAnnotation > &  as )

inlinestatic

References String::number().

Referenced by RNPxlSearch::postScoreHits_().

shiftedToPHFA()

static std::vector<PeptideHit::PeakAnnotation> shiftedToPHFA ( const map< String, set< pair< String, double > > > &  shifted_ions )

inlinestatic

References PeptideHit::PeakAnnotation::annotation, PeptideHit::PeakAnnotation::charge, PeptideHit::PeakAnnotation::intensity, and PeptideHit::PeakAnnotation::mz.