ClusteredMS2ConsensusSpectrum Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.h>

Inheritance diagram for ClusteredMS2ConsensusSpectrum:

Public Member Functions
	~ClusteredMS2ConsensusSpectrum ()
	ClusteredMS2ConsensusSpectrum ()
	ClusteredMS2ConsensusSpectrum (MS2Fragment *)
	ClusteredMS2ConsensusSpectrum (MS2ConsensusSpectrum *)
	ClusteredMS2ConsensusSpectrum (double, double, int, int)
	ClusteredMS2ConsensusSpectrum (const ClusteredMS2ConsensusSpectrum &)
	ClusteredMS2ConsensusSpectrum (const ClusteredMS2ConsensusSpectrum *)
bool	operator== (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator<= (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator>= (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator< (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator> (const ClusteredMS2ConsensusSpectrum &)
void	constructClusteredConsenusSpectraFragments (MS2ConsensusSpectrum *)
void	addMS2ConsensusSpectrum (MS2ConsensusSpectrum *)
void	extractFragmentsFromSpectra (MS2ConsensusSpectrum *)
void	mergeMS2Fragments (MS2Fragment *, MS2Fragment *)
void	plotCombinedSpectra ()
void	removeOutlierFragments ()
int	getNumberOfSpectraScan ()
std::vector< int >::iterator	getSpectraScanNumberStart ()
std::vector< int >::iterator	getSpectraScanNumberEnd ()
Public Member Functions inherited from MS2ConsensusSpectrum
	~MS2ConsensusSpectrum ()
	MS2ConsensusSpectrum ()
	MS2ConsensusSpectrum (MS2Fragment *)
	MS2ConsensusSpectrum (double iPrecursorMZ, double iTR, int iChrg, int iApexScan)
	MS2ConsensusSpectrum (const MS2ConsensusSpectrum &)
	MS2ConsensusSpectrum (const MS2ConsensusSpectrum *)
MS2ConsensusSpectrum &	operator= (const MS2ConsensusSpectrum &)
bool	operator== (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator<= (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator>= (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator< (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator> (const MS2ConsensusSpectrum &)
double	getLCElutionPeakSimilarity (MS2Fragment *)
void	addMS2Fragment (MS2Fragment *)
void	computeMS2SpectrumParameters ()
void	show_info ()
MS2Fragment *	findMS2Fragment (double)
double	getPrecursorMZ ()
double	getTR ()
double	getStartTR ()
double	getEndTR ()
void	setPrecursorChrg (int in)
int	getPrecursorChrg ()
int	getApexScan ()
int	getStartScan ()
int	getEndScan ()
int	getNbMS2Fragments ()
std::multimap< double, MS2Fragment >::iterator	getMS2FragmentPeakStart ()
std::multimap< double, MS2Fragment >::iterator	getMS2FragmentPeakEnd ()
std::multimap< double, MS2Fragment > *	getMS2FragmentMap ()

Private Attributes
std::vector< int >	MS2Scans

Additional Inherited Members
Public Attributes inherited from MS2ConsensusSpectrum
double	precursorMZ
double	TR
Static Public Attributes inherited from MS2ConsensusSpectrum
static double	MS2_MZ_TOLERANCE
Protected Attributes inherited from MS2ConsensusSpectrum
double	startTR
double	endTR
int	z
int	apexScan
int	startScan
int	endScan

Constructor & Destructor Documentation

~ClusteredMS2ConsensusSpectrum()

~ClusteredMS2ConsensusSpectrum

(

)

ClusteredMS2ConsensusSpectrum() [1/6]

ClusteredMS2ConsensusSpectrum ( )

inline

References OpenMS::operator<(), and KDTree::operator==().

ClusteredMS2ConsensusSpectrum() [2/6]

ClusteredMS2ConsensusSpectrum

(

MS2Fragment *

)

ClusteredMS2ConsensusSpectrum() [3/6]

ClusteredMS2ConsensusSpectrum

(

MS2ConsensusSpectrum *

)

ClusteredMS2ConsensusSpectrum() [4/6]

ClusteredMS2ConsensusSpectrum	(	double	,
		double	,
		int	,
		int
	)

ClusteredMS2ConsensusSpectrum() [5/6]

ClusteredMS2ConsensusSpectrum

(

const ClusteredMS2ConsensusSpectrum &

)

ClusteredMS2ConsensusSpectrum() [6/6]

ClusteredMS2ConsensusSpectrum

(

const ClusteredMS2ConsensusSpectrum *

)

Member Function Documentation

addMS2ConsensusSpectrum()

void addMS2ConsensusSpectrum

(

MS2ConsensusSpectrum *

)

constructClusteredConsenusSpectraFragments()

void constructClusteredConsenusSpectraFragments

(

MS2ConsensusSpectrum *

)

extractFragmentsFromSpectra()

void extractFragmentsFromSpectra

(

MS2ConsensusSpectrum *

)

getNumberOfSpectraScan()

int getNumberOfSpectraScan

(

)

getSpectraScanNumberEnd()

std::vector<int>::iterator getSpectraScanNumberEnd

(

)

getSpectraScanNumberStart()

std::vector<int>::iterator getSpectraScanNumberStart

(

)

mergeMS2Fragments()

void mergeMS2Fragments	(	MS2Fragment *	,
		MS2Fragment *
	)

operator<()

ClusteredMS2ConsensusSpectrum& operator<

(

const ClusteredMS2ConsensusSpectrum &

)

operator<=()

ClusteredMS2ConsensusSpectrum& operator<=

(

const ClusteredMS2ConsensusSpectrum &

)

operator==()

bool operator==

(

const ClusteredMS2ConsensusSpectrum &

)

operator>()

ClusteredMS2ConsensusSpectrum& operator>

(

const ClusteredMS2ConsensusSpectrum &

)

operator>=()

ClusteredMS2ConsensusSpectrum& operator>=

(

const ClusteredMS2ConsensusSpectrum &

)

plotCombinedSpectra()

void plotCombinedSpectra

(

)

removeOutlierFragments()

void removeOutlierFragments

(

)

Member Data Documentation

MS2Scans

std::vector<int> MS2Scans

private