ExperimentalDesign Class Reference

A TSV and user friendly representation of the experimental design. Used for loading and storing the experimental design in OpenMS. More...

#include <OpenMS/METADATA/ExperimentalDesign.h>

Classes
class	MSRun

Public Member Functions
std::map< unsigned int, std::set< unsigned int > >	getFractionToRunsMapping () const
	return fraction index to MSRuns (e.g., Fraction 1 maps to MSRun 1 and 2 in the example above) More...
bool	sameNrOfRunsPerFraction () const
	return if each fraction number is associated with the same number of runs More...
void	load (const String &tsv_file, ExperimentalDesign &design) const
	Loads an experimental design from a tabular separated file. More...

Public Attributes
std::vector< MSRun >	runs

Detailed Description

A TSV and user friendly representation of the experimental design. Used for loading and storing the experimental design in OpenMS.

Member Function Documentation

getFractionToRunsMapping()

std::map<unsigned int, std::set<unsigned int> > getFractionToRunsMapping

(

)

const

return fraction index to MSRuns (e.g., Fraction 1 maps to MSRun 1 and 2 in the example above)

load()

void load	(	const String &	tsv_file,
		ExperimentalDesign &	design
	)		const

Loads an experimental design from a tabular separated file.

TODO: 2) Optional section with assay-level information of the experimental design. Required to perform statistical down-stream processing.

Assay Spectra File Assay Quantification Numeric Factor "concentration [mmol/l]" 1 humanA.mzML iTRAQ reagent 114 0.434 2 humanA.mzML iTRAQ reagent 115 223.34 3 humanA.mzML iTRAQ reagent 116 984.52

sameNrOfRunsPerFraction()

bool sameNrOfRunsPerFraction

(

)

const

return if each fraction number is associated with the same number of runs

Member Data Documentation

runs

std::vector<MSRun> runs