HMMState Class Reference

Hidden Markov Model State class for the Hidden Markov Model. More...

#include <OpenMS/ANALYSIS/ID/HiddenMarkovModel.h>

Public Member Functions
HMMState &	operator= (const HMMState &)
Constructors and destructors
	HMMState ()
	default constructor More...
	HMMState (const HMMState &state)
	copy constructor More...
	HMMState (const String &name, bool hidden=true)
	constructor with name and visibility option More...
virtual	~HMMState ()
	destructor More...
void	setName (const String &name)
	sets the name of the state More...
const String &	getName () const
	returns the name of the state More...
void	setHidden (bool hidden)
	sets the hidden property to the state More...
bool	isHidden () const
	returns true if the state is hidden More...
void	addPredecessorState (HMMState *state)
	adds the given predecessor state to the list More...
void	deletePredecessorState (HMMState *state)
	deletes the given predecessor state from the list More...
void	addSuccessorState (HMMState *state)
	add the given successor state to the list More...
void	deleteSuccessorState (HMMState *state)
	deletes the given successor state from the list More...
const std::set< HMMState * > &	getPredecessorStates () const
	returns the predecessor states of the state More...
const std::set< HMMState * > &	getSuccessorStates () const
	return the successor states of the state More...

Protected Attributes
bool	hidden_
String	name_
std::set< HMMState * >	pre_states_
std::set< HMMState * >	succ_states_

Detailed Description

Hidden Markov Model State class for the Hidden Markov Model.

Constructor & Destructor Documentation

HMMState() [1/3]

HMMState

(

)

default constructor

HMMState() [2/3]

HMMState

(

const HMMState &

state

)

copy constructor

HMMState() [3/3]

HMMState	(	const String &	name,
		bool	hidden = true
	)

constructor with name and visibility option

~HMMState()

virtual ~HMMState ( )

virtual

destructor

Member Function Documentation

addPredecessorState()

void addPredecessorState

(

HMMState *

state

)

adds the given predecessor state to the list

addSuccessorState()

void addSuccessorState

(

HMMState *

state

)

add the given successor state to the list

deletePredecessorState()

void deletePredecessorState

(

HMMState *

state

)

deletes the given predecessor state from the list

deleteSuccessorState()

void deleteSuccessorState

(

HMMState *

state

)

deletes the given successor state from the list

getName()

const String& getName

(

)

const

returns the name of the state

getPredecessorStates()

const std::set<HMMState *>& getPredecessorStates

(

)

const

returns the predecessor states of the state

getSuccessorStates()

const std::set<HMMState *>& getSuccessorStates

(

)

const

return the successor states of the state

isHidden()

bool isHidden

(

)

const

returns true if the state is hidden

operator=()

HMMState& operator=

(

const HMMState &

)

setHidden()

void setHidden

(

bool

hidden

)

sets the hidden property to the state

setName()

void setName

(

const String &

name

)

sets the name of the state

Accessors

Member Data Documentation

hidden_

bool hidden_

protected

name_

String name_

protected

pre_states_

std::set<HMMState *> pre_states_

protected

succ_states_

std::set<HMMState *> succ_states_

protected