LOWESS (locally weighted scatterplot smoothing). More...
#include <OpenMS/FILTERING/SMOOTHING/LowessSmoothing.h>
Public Types | |
| typedef std::vector< double > | DoubleVector |
Public Member Functions | |
| LowessSmoothing () | |
| Default constructor. More... | |
| virtual | ~LowessSmoothing () |
| Destructor. More... | |
| void | smoothData (const DoubleVector &, const DoubleVector &, DoubleVector &) |
| Smoothing method that receives x and y coordinates (e.g., RT and intensities) and computes smoothed intensities. More... | |
 Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages. More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor. More... | |
| virtual | ~DefaultParamHandler () |
| Destructor. More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
| Assignment operator. More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const |
| Equality operator. More... | |
| void | setParameters (const Param ¶m) |
| Sets the parameters. More... | |
| const Param & | getParameters () const |
| Non-mutable access to the parameters. More... | |
| const Param & | getDefaults () const |
| Non-mutable access to the default parameters. More... | |
| const String & | getName () const |
| Non-mutable access to the name. More... | |
| void | setName (const String &name) |
| Mutable access to the name. More... | |
| const std::vector< String > & | getSubsections () const |
| Non-mutable access to the registered subsections. More... | |
Protected Member Functions | |
| virtual void | updateMembers_ () |
| This method is used to update extra member variables at the end of the setParameters() method. More... | |
| Protected Member Functions inherited from DefaultParamHandler | |
| void | defaultsToParam_ () |
| Updates the parameters after the defaults have been set in the constructor. More... | |
Private Member Functions | |
| double | tricube_ (double, double) |
Private Attributes | |
| double | window_size_ |
Additional Inherited Members | |
| Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ |
| Container for current parameters. More... | |
| Param | defaults_ |
| Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
| std::vector< String > | subsections_ |
| Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
| String | error_name_ |
| Name that is displayed in error messages during the parameter checking. More... | |
| bool | check_defaults_ |
| If this member is set to false no checking if parameters in done;. More... | |
| bool | warn_empty_defaults_ |
| If this member is set to false no warning is emitted when defaults are empty;. More... | |
Detailed Description
LOWESS (locally weighted scatterplot smoothing).
A smoothing technique that a quadratic model to localized subsets of the data, point by point.
This is particularly useful for smoothing intensities in spectra or chromatograms. In this case, the window size for the smoothing should be set proportional to the peak width (see LowessSmoothing parameters).
Note that this should work best for few datapoints that have strong non-linear behavior. For large datasets with mostly linear behavior, use FastLowessSmoothing
Parameters of this class are:| Name | Type | Default | Restrictions | Description |
|---|---|---|---|---|
| window_size | int | 10 | The number of peaks to be included for local fitting in one window. |
Note:
- If a section name is documented, the documentation is displayed as tooltip.
- Advanced parameter names are italic.
Member Typedef Documentation
◆ DoubleVector
| typedef std::vector<double> DoubleVector |
Constructor & Destructor Documentation
◆ LowessSmoothing()
| LowessSmoothing | ( | ) |
Default constructor.
◆ ~LowessSmoothing()
|
virtual |
Destructor.
Member Function Documentation
◆ smoothData()
| void smoothData | ( | const DoubleVector & | , |
| const DoubleVector & | , | ||
| DoubleVector & | |||
| ) |
Smoothing method that receives x and y coordinates (e.g., RT and intensities) and computes smoothed intensities.
◆ tricube_()
◆ updateMembers_()
|
protectedvirtual |
This method is used to update extra member variables at the end of the setParameters() method.
Also call it at the end of the derived classes' copy constructor and assignment operator.
The default implementation is empty.
Reimplemented from DefaultParamHandler.
Member Data Documentation
◆ window_size_
|
private |