|
| MSQuantifications () |
| Constructor. More...
|
|
| MSQuantifications (FeatureMap fm, ExperimentalSettings &es, std::vector< DataProcessing > &dps, std::vector< std::vector< std::pair< String, double > > > labels=(std::vector< std::vector< std::pair< String, double > > >())) |
| Detailed Constructor. More...
|
|
| ~MSQuantifications () |
| Destructor. More...
|
|
| MSQuantifications (const MSQuantifications &source) |
| Copy constructor. More...
|
|
MSQuantifications & | operator= (const MSQuantifications &source) |
| Assignment operator. More...
|
|
bool | operator== (const MSQuantifications &rhs) const |
| Equality operator. More...
|
|
bool | operator!= (const MSQuantifications &rhs) const |
| Equality operator. More...
|
|
const std::vector< DataProcessing > | getDataProcessingList () const |
| Loads data from a text file. More...
|
|
const std::vector< Assay > & | getAssays () const |
|
std::vector< Assay > & | getAssays () |
|
const std::vector< ConsensusMap > & | getConsensusMaps () const |
|
std::vector< ConsensusMap > & | getConsensusMaps () |
|
void | setConsensusMaps (const std::vector< ConsensusMap > &) |
|
const std::vector< FeatureMap > & | getFeatureMaps () const |
|
const AnalysisSummary & | getAnalysisSummary () const |
|
AnalysisSummary & | getAnalysisSummary () |
|
void | setDataProcessingList (std::vector< DataProcessing > &dpl) |
|
void | setAnalysisSummaryQuantType (QUANT_TYPES r) |
|
void | addConsensusMap (ConsensusMap &m) |
|
void | assignUIDs () |
|
void | registerExperiment (PeakMap &exp, std::vector< std::vector< std::pair< String, double > > > labels) |
|
void | registerExperiment (ExperimentalSettings &es, std::vector< DataProcessing > &dp, std::vector< std::vector< std::pair< String, double > > > labels=(std::vector< std::vector< std::pair< String, double > > >())) |
|
| ExperimentalSettings () |
| Constructor. More...
|
|
| ExperimentalSettings (const ExperimentalSettings &source) |
| Copy constructor. More...
|
|
| ~ExperimentalSettings () |
| Destructor. More...
|
|
ExperimentalSettings & | operator= (const ExperimentalSettings &source) |
| Assignment operator. More...
|
|
bool | operator== (const ExperimentalSettings &rhs) const |
| Equality operator. More...
|
|
bool | operator!= (const ExperimentalSettings &rhs) const |
| Equality operator. More...
|
|
const Sample & | getSample () const |
| returns a const reference to the sample description More...
|
|
Sample & | getSample () |
| returns a mutable reference to the sample description More...
|
|
void | setSample (const Sample &sample) |
| sets the sample description More...
|
|
const std::vector< SourceFile > & | getSourceFiles () const |
| returns a const reference to the source data file More...
|
|
std::vector< SourceFile > & | getSourceFiles () |
| returns a mutable reference to the source data file More...
|
|
void | setSourceFiles (const std::vector< SourceFile > &source_files) |
| sets the source data file More...
|
|
const std::vector< ContactPerson > & | getContacts () const |
| returns a const reference to the list of contact persons More...
|
|
std::vector< ContactPerson > & | getContacts () |
| returns a mutable reference to the list of contact persons More...
|
|
void | setContacts (const std::vector< ContactPerson > &contacts) |
| sets the list of contact persons More...
|
|
const Instrument & | getInstrument () const |
| returns a const reference to the MS instrument description More...
|
|
Instrument & | getInstrument () |
| returns a mutable reference to the MS instrument description More...
|
|
void | setInstrument (const Instrument &instrument) |
| sets the MS instrument description More...
|
|
const HPLC & | getHPLC () const |
| returns a const reference to the description of the HPLC run More...
|
|
HPLC & | getHPLC () |
| returns a mutable reference to the description of the HPLC run More...
|
|
void | setHPLC (const HPLC &hplc) |
| sets the description of the HPLC run More...
|
|
const DateTime & | getDateTime () const |
| returns the date the experiment was performed More...
|
|
void | setDateTime (const DateTime &date) |
| sets the date the experiment was performed More...
|
|
const String & | getComment () const |
| returns the free-text comment More...
|
|
void | setComment (const String &comment) |
| sets the free-text comment More...
|
|
const std::vector< ProteinIdentification > & | getProteinIdentifications () const |
| returns a const reference to the protein ProteinIdentification vector More...
|
|
std::vector< ProteinIdentification > & | getProteinIdentifications () |
| returns a mutable reference to the protein ProteinIdentification vector More...
|
|
void | setProteinIdentifications (const std::vector< ProteinIdentification > &protein_identifications) |
| sets the protein ProteinIdentification vector More...
|
|
const String & | getFractionIdentifier () const |
| returns fraction identifier More...
|
|
void | setFractionIdentifier (const String &fraction_identifier) |
| sets the fraction identifier More...
|
|
| MetaInfoInterface () |
| Constructor. More...
|
|
| MetaInfoInterface (const MetaInfoInterface &rhs) |
| Copy constructor. More...
|
|
| ~MetaInfoInterface () |
| Destructor. More...
|
|
MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| Assignment operator. More...
|
|
bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More...
|
|
bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More...
|
|
const DataValue & | getMetaValue (const String &name) const |
| Returns the value corresponding to a string (or DataValue::EMPTY if not found) More...
|
|
const DataValue & | getMetaValue (UInt index) const |
| Returns the value corresponding to an index (or DataValue::EMPTY if not found) More...
|
|
bool | metaValueExists (const String &name) const |
| Returns whether an entry with the given name exists. More...
|
|
bool | metaValueExists (UInt index) const |
| Returns whether an entry with the given index exists. More...
|
|
void | setMetaValue (const String &name, const DataValue &value) |
| Sets the DataValue corresponding to a name. More...
|
|
void | setMetaValue (UInt index, const DataValue &value) |
| Sets the DataValue corresponding to an index. More...
|
|
void | removeMetaValue (const String &name) |
| Removes the DataValue corresponding to name if it exists. More...
|
|
void | removeMetaValue (UInt index) |
| Removes the DataValue corresponding to index if it exists. More...
|
|
void | getKeys (std::vector< String > &keys) const |
| Fills the given vector with a list of all keys for which a value is set. More...
|
|
void | getKeys (std::vector< UInt > &keys) const |
| Fills the given vector with a list of all keys for which a value is set. More...
|
|
bool | isMetaEmpty () const |
| Returns if the MetaInfo is empty. More...
|
|
void | clearMetaInfo () |
| Removes all meta values. More...
|
|
| DocumentIdentifier () |
| default constructor More...
|
|
| DocumentIdentifier (const DocumentIdentifier &source) |
| Copy constructor. More...
|
|
DocumentIdentifier & | operator= (const DocumentIdentifier &source) |
| Assignment operator. More...
|
|
bool | operator== (const DocumentIdentifier &rhs) const |
| Equality operator. More...
|
|
virtual | ~DocumentIdentifier () |
| destructor More...
|
|
void | setIdentifier (const String &id) |
| set document identifier (e.g. an LSID) More...
|
|
const String & | getIdentifier () const |
| retrieve document identifier (e.g. an LSID) More...
|
|
void | swap (DocumentIdentifier &from) |
| exchange content with from More...
|
|
void | setLoadedFilePath (const String &file_name) |
| set the file_name_ according to absolute path of the file loaded from preferably done whilst loading More...
|
|
const String & | getLoadedFilePath () const |
| get the file_name_ which is the absolute path to the file loaded from More...
|
|
void | setLoadedFileType (const String &file_name) |
| set the file_type according to the type of the file loaded from (see FileHandler::Type) preferably done whilst loading More...
|
|
const FileTypes::Type & | getLoadedFileType () const |
| get the file_type (e.g. featureXML, consensusXML, mzData, mzXML, mzML, ...) of the file loaded from More...
|
|