ModifiedPeptideGenerator Class Reference

#include <OpenMS/ANALYSIS/RNPXL/ModifiedPeptideGenerator.h>

Static Public Member Functions
static void	applyFixedModifications (const std::vector< ResidueModification >::const_iterator &fixed_mods_begin, const std::vector< ResidueModification >::const_iterator &fixed_mods_end, AASequence &peptide)
static void	applyVariableModifications (const std::vector< ResidueModification >::const_iterator &var_mods_begin, const std::vector< ResidueModification >::const_iterator &var_mods_end, const AASequence &peptide, Size max_variable_mods_per_peptide, std::vector< AASequence > &all_modified_peptides, bool keep_original=true)

Static Protected Member Functions
static void	recurseAndGenerateVariableModifiedPeptides_ (const std::vector< int > &subset_indices, const std::map< int, std::vector< ResidueModification > > &map_compatibility, int depth, const AASequence &current_peptide, std::vector< AASequence > &modified_peptides)
static void	applyAtMostOneVariableModification_ (const std::vector< ResidueModification >::const_iterator &var_mods_begin, const std::vector< ResidueModification >::const_iterator &var_mods_end, const AASequence &peptide, std::vector< AASequence > &all_modified_peptides, bool keep_original=true)

Member Function Documentation

applyAtMostOneVariableModification_()

static void applyAtMostOneVariableModification_ ( const std::vector< ResidueModification >::const_iterator &  var_mods_begin, const std::vector< ResidueModification >::const_iterator &  var_mods_end, const AASequence &  peptide, std::vector< AASequence > &  all_modified_peptides, bool  keep_original = true  )

staticprotected

applyFixedModifications()

static void applyFixedModifications ( const std::vector< ResidueModification >::const_iterator &  fixed_mods_begin, const std::vector< ResidueModification >::const_iterator &  fixed_mods_end, AASequence &  peptide  )

static

Referenced by SimpleSearchEngine::main_(), RNPxlSearch::main_(), RNPxlSearch::postProcessHits_(), and RNPxlSearch::postScoreHits_().

applyVariableModifications()

static void applyVariableModifications ( const std::vector< ResidueModification >::const_iterator &  var_mods_begin, const std::vector< ResidueModification >::const_iterator &  var_mods_end, const AASequence &  peptide, Size  max_variable_mods_per_peptide, std::vector< AASequence > &  all_modified_peptides, bool  keep_original = true  )

static

Referenced by SimpleSearchEngine::main_(), RNPxlSearch::main_(), RNPxlSearch::postProcessHits_(), and RNPxlSearch::postScoreHits_().

recurseAndGenerateVariableModifiedPeptides_()

static void recurseAndGenerateVariableModifiedPeptides_ ( const std::vector< int > &  subset_indices, const std::map< int, std::vector< ResidueModification > > &  map_compatibility, int  depth, const AASequence &  current_peptide, std::vector< AASequence > &  modified_peptides  )

staticprotected