data structure for mass shift pattern More...
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.h>
Classes | |
struct | DeltaMass |
mass shift with corresponding label set More... | |
Public Types | |
typedef std::multiset< String > | LabelSet |
set of labels associated with a mass shift More... | |
Public Member Functions | |
MultiplexDeltaMasses () | |
constructor More... | |
MultiplexDeltaMasses (const std::vector< DeltaMass > &dm) | |
constructor More... | |
std::vector< DeltaMass > & | getDeltaMasses () |
returns delta masses More... | |
const std::vector< DeltaMass > & | getDeltaMasses () const |
returns delta masses More... | |
Static Public Member Functions | |
static String | labelSetToString (const LabelSet ls) |
converts a label set to a string More... | |
Private Attributes | |
std::vector< DeltaMass > | delta_masses_ |
mass shifts between peptides (including zero mass shift for first peptide) More... | |
data structure for mass shift pattern
Groups of labelled peptides appear with characteristic mass shifts.
For example, for an Arg6 labeled SILAC peptide pair we expect to see mass shifts of 0 and 6 Da. Or as second example, for a peptide pair of a dimethyl labelled sample with a single lysine we will see mass shifts of 56 Da and 64 Da. 28 Da (N-term) + 28 Da (K) and 34 Da (N-term) + 34 Da (K) for light and heavy partners respectively.
The data structure stores the mass shifts and corresponding labels for a group of matching peptide features.
set of labels associated with a mass shift
For example, a set of SILAC labels [Lys8, Lys8, Arg10] would result in a +26 Da mass shift.
constructor
MultiplexDeltaMasses | ( | const std::vector< DeltaMass > & | dm | ) |
constructor
std::vector<DeltaMass>& getDeltaMasses | ( | ) |
returns delta masses
const std::vector<DeltaMass>& getDeltaMasses | ( | ) | const |
returns delta masses
|
private |
mass shifts between peptides (including zero mass shift for first peptide)
OpenMS / TOPP release 2.3.0 | Documentation generated on Tue Jan 9 2018 18:22:11 using doxygen 1.8.13 |