| ActionMode enum name | XMLHandler | |
| add_dataprocessing_ | MSDataWritingConsumer | protected |
| addDataProcessing(DataProcessing d) | MSDataWritingConsumer | virtual |
| additional_dataprocessing_ | MSDataWritingConsumer | protected |
| addSpectrumMetaData_(const std::vector< MzMLHandlerHelper::BinaryData > &input_data, const Size n, SpectrumType &spectrum) const | MzMLHandler | protected |
| asBool_(const String &in) | XMLHandler | inlineprotected |
| asDateTime_(String date_string) | XMLHandler | inlineprotected |
| asDouble_(const String &in) | XMLHandler | inlineprotected |
| asFloat_(const String &in) | XMLHandler | inlineprotected |
| asInt_(const String &in) | XMLHandler | inlineprotected |
| asInt_(const XMLCh *in) | XMLHandler | inlineprotected |
| asUInt_(const String &in) | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| BinaryData typedef | MzMLHandler | protected |
| cexp_ | MzMLHandler | protected |
| characters(const XMLCh *const chars, const XMLSize_t length) | MzMLHandler | virtual |
| chromatogram_ | MzMLHandler | protected |
| chromatogram_count | MzMLHandler | protected |
| chromatogram_data_ | MzMLHandler | protected |
| ChromatogramPeakType typedef | MzMLHandler | protected |
| chromatograms_expected_ | MSDataWritingConsumer | protected |
| chromatograms_offsets | MzMLHandler | protected |
| chromatograms_written_ | MSDataWritingConsumer | protected |
| ChromatogramType typedef | MSDataWritingConsumer | |
| consumeChromatogram(ChromatogramType &) | NoopMSDataWritingConsumer | inlinevirtual |
| consumer_ | MzMLHandler | protected |
| consumeSpectrum(SpectrumType &) | NoopMSDataWritingConsumer | inlinevirtual |
| current_id_ | MzMLHandler | protected |
| cv_ | MzMLHandler | protected |
| cv_terms_ | XMLHandler | protected |
| cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected |
| data_ | MzMLHandler | protected |
| decoder_ | MzMLHandler | protected |
| default_array_length_ | MzMLHandler | protected |
| default_processing_ | MzMLHandler | protected |
| doCleanup_() | NoopMSDataWritingConsumer | inlineprivatevirtual |
| dps_ | MSDataWritingConsumer | protected |
| endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) | MzMLHandler | virtual |
| equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
| error(const xercesc::SAXParseException &exception) | XMLHandler | |
| error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| error_message_ | XMLHandler | mutableprotected |
| errorString() | XMLHandler | |
| exp_ | MzMLHandler | protected |
| fatalError(const xercesc::SAXParseException &exception) | XMLHandler | |
| fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| file_ | XMLHandler | protected |
| fillChromatogramData_() | MzMLHandler | protected |
| getChildWithName_(const String &parent_accession, const String &name) const | MzMLHandler | protected |
| getCounts(Size &spectra_counts, Size &chromatogram_counts) | MzMLHandler | inline |
| getNrChromatogramsWritten() | MSDataWritingConsumer | virtual |
| getNrSpectraWritten() | MSDataWritingConsumer | virtual |
| getOptions() | MzMLHandler | inline |
| handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession="") | MzMLHandler | protected |
| handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value) | MzMLHandler | protected |
| in_spectrum_list_ | MzMLHandler | protected |
| instruments_ | MzMLHandler | protected |
| LOAD enum value | XMLHandler | |
| logger_ | MzMLHandler | protected |
| mapping_ | MzMLHandler | protected |
| MapType typedef | MSDataWritingConsumer | |
| MSDataWritingConsumer(String filename) | MSDataWritingConsumer | explicit |
| MzMLHandler(MapType &exp, const String &filename, const String &version, ProgressLogger &logger) | MzMLHandler | |
| MzMLHandler(const MapType &exp, const String &filename, const String &version, const ProgressLogger &logger) | MzMLHandler | |
| NoopMSDataWritingConsumer(String filename) | NoopMSDataWritingConsumer | inlineexplicit |
| ofs_ | MSDataWritingConsumer | protected |
| open_tags_ | XMLHandler | protected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| options_ | MzMLHandler | protected |
| PeakType typedef | MzMLHandler | protected |
| populateChromatogramsWithData() | MzMLHandler | protected |
| populateChromatogramsWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &default_arr_length, const PeakFileOptions &peak_file_options, ChromatogramType &inp_chromatogram) | MzMLHandler | protected |
| populateSpectraWithData() | MzMLHandler | protected |
| populateSpectraWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &default_arr_length, const PeakFileOptions &peak_file_options, SpectrumType &spectrum) | MzMLHandler | protected |
| processChromatogram_(MapType::ChromatogramType &) | NoopMSDataWritingConsumer | inlineprivatevirtual |
| processing_ | MzMLHandler | protected |
| processSpectrum_(MapType::SpectrumType &) | NoopMSDataWritingConsumer | inlineprivatevirtual |
| ref_param_ | MzMLHandler | protected |
| reset() | XMLHandler | |
| rt_set_ | MzMLHandler | protected |
| samples_ | MzMLHandler | protected |
| scan_count | MzMLHandler | protected |
| selected_ion_count_ | MzMLHandler | protected |
| setExpectedSize(Size expectedSpectra, Size expectedChromatograms) | MSDataWritingConsumer | virtual |
| setExperimentalSettings(const ExperimentalSettings &) | NoopMSDataWritingConsumer | inlinevirtual |
| setMSDataConsumer(Interfaces::IMSDataConsumer *consumer) | MzMLHandler | inline |
| setOptions(const PeakFileOptions &opt) | MzMLHandler | inline |
| settings_ | MSDataWritingConsumer | protected |
| skip_chromatogram_ | MzMLHandler | protected |
| skip_spectrum_ | MzMLHandler | protected |
| sm_ | XMLHandler | protected |
| software_ | MzMLHandler | protected |
| source_files_ | MzMLHandler | protected |
| spec_ | MzMLHandler | protected |
| spectra_expected_ | MSDataWritingConsumer | protected |
| spectra_offsets | MzMLHandler | protected |
| spectra_written_ | MSDataWritingConsumer | protected |
| spectrum_data_ | MzMLHandler | protected |
| SpectrumType typedef | MSDataWritingConsumer | |
| started_writing_ | MSDataWritingConsumer | protected |
| startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) | MzMLHandler | virtual |
| STORE enum value | XMLHandler | |
| validateCV_(const ControlledVocabulary::CVTerm &c, const String &path, const Internal::MzMLValidator &validator) const | MzMLHandler | protected |
| validator_ | MSDataWritingConsumer | protected |
| version_ | XMLHandler | protected |
| warning(const xercesc::SAXParseException &exception) | XMLHandler | |
| warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| writeBinaryDataArray(std::ostream &os, const PeakFileOptions &pf_options_, std::vector< DataType > data_to_encode, bool is32bit, String array_type) | MzMLHandler | protected |
| writeChromatogram_(std::ostream &os, const ChromatogramType &chromatogram, Size c, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writeContainerData(std::ostream &os, const PeakFileOptions &pf_options_, const ContainerT &container, String array_type) | MzMLHandler | protected |
| writeCV_(const ControlledVocabulary::CVTerm &c, const DataValue &metaValue) const | MzMLHandler | protected |
| writeDataProcessing_(std::ostream &os, const String &id, const std::vector< ConstDataProcessingPtr > &dps, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writeHeader_(std::ostream &os, const MapType &exp, std::vector< std::vector< ConstDataProcessingPtr > > &dps, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writePrecursor_(std::ostream &os, const Precursor &precursor, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writeProduct_(std::ostream &os, const Product &product, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writeSoftware_(std::ostream &os, const String &id, const Software &software, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writeSourceFile_(std::ostream &os, const String &id, const SourceFile &software, Internal::MzMLValidator &validator) | MzMLHandler | protected |
| writeSpectrum_(std::ostream &os, const SpectrumType &spec, Size s, Internal::MzMLValidator &validator, bool renew_native_ids, std::vector< std::vector< ConstDataProcessingPtr > > &dps) | MzMLHandler | protected |
| writeTo(std::ostream &os) | MzMLHandler | virtual |
| writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent, String path, Internal::MzMLValidator &validator) const | MzMLHandler | protected |
| OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
| writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
| writing_chromatograms_ | MSDataWritingConsumer | protected |
| writing_spectra_ | MSDataWritingConsumer | protected |
| XMLHandler(const String &filename, const String &version) | XMLHandler | |
| ~IMSDataConsumer() | IMSDataConsumer | inlinevirtual |
| ~MSDataWritingConsumer() | MSDataWritingConsumer | virtual |
| ~MzMLHandler() | MzMLHandler | virtual |
| ~XMLHandler() | XMLHandler | virtual |