| analyzeHeader_(UInt &expCol, UInt &fileCol, StringList &header) | QuantitativeExperimentalDesign | private |
| applyDesign2Quantifier(PeptideAndProteinQuant &quantifier, TextFile &file, StringList &fileNames) | QuantitativeExperimentalDesign | |
| applyDesign2Resolver(ProteinResolver &resolver, TextFile &file, StringList &fileNames) | QuantitativeExperimentalDesign | |
| check_defaults_ | DefaultParamHandler | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| findRelevantFilePaths_(std::map< String, StringList > &design2FileBaseName, std::map< String, StringList > &design2FilePath, StringList &filePaths) | QuantitativeExperimentalDesign | private |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSeparator_(String &separator) | QuantitativeExperimentalDesign | private |
| getSubsections() const | DefaultParamHandler | |
| mapFiles2Design_(std::map< String, StringList > &experiments, TextFile &file) | QuantitativeExperimentalDesign | private |
| mergeConsensusMaps_(ConsensusMap &map, const String &experiment, StringList &file_paths) | QuantitativeExperimentalDesign | private |
| mergeFeatureMaps_(FeatureMap &map, const String &experiment, StringList &file_paths) | QuantitativeExperimentalDesign | private |
| mergeIDFiles_(std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const String &experiment, StringList &file_paths) | QuantitativeExperimentalDesign | private |
| operator=(const QuantitativeExperimentalDesign &) | QuantitativeExperimentalDesign | private |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| QuantitativeExperimentalDesign() | QuantitativeExperimentalDesign | |
| QuantitativeExperimentalDesign(const QuantitativeExperimentalDesign &) | QuantitativeExperimentalDesign | private |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~QuantitativeExperimentalDesign() | QuantitativeExperimentalDesign | virtual |