Merge files according to experimental design. More...
#include <OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h>
Public Member Functions | |
QuantitativeExperimentalDesign () | |
Default constructor. More... | |
virtual | ~QuantitativeExperimentalDesign () |
void | applyDesign2Resolver (ProteinResolver &resolver, TextFile &file, StringList &fileNames) |
xxxxxxx More... | |
void | applyDesign2Quantifier (PeptideAndProteinQuant &quantifier, TextFile &file, StringList &fileNames) |
xxxxxxx More... | |
Public Member Functions inherited from DefaultParamHandler | |
DefaultParamHandler (const String &name) | |
Constructor with name that is displayed in error messages. More... | |
DefaultParamHandler (const DefaultParamHandler &rhs) | |
Copy constructor. More... | |
virtual | ~DefaultParamHandler () |
Destructor. More... | |
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
Assignment operator. More... | |
virtual bool | operator== (const DefaultParamHandler &rhs) const |
Equality operator. More... | |
void | setParameters (const Param ¶m) |
Sets the parameters. More... | |
const Param & | getParameters () const |
Non-mutable access to the parameters. More... | |
const Param & | getDefaults () const |
Non-mutable access to the default parameters. More... | |
const String & | getName () const |
Non-mutable access to the name. More... | |
void | setName (const String &name) |
Mutable access to the name. More... | |
const std::vector< String > & | getSubsections () const |
Non-mutable access to the registered subsections. More... | |
Private Member Functions | |
QuantitativeExperimentalDesign (const QuantitativeExperimentalDesign &) | |
Not implemented. More... | |
QuantitativeExperimentalDesign & | operator= (const QuantitativeExperimentalDesign &) |
Not implemented. More... | |
void | mergeFeatureMaps_ (FeatureMap &map, const String &experiment, StringList &file_paths) |
void | mergeConsensusMaps_ (ConsensusMap &map, const String &experiment, StringList &file_paths) |
void | mergeIDFiles_ (std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const String &experiment, StringList &file_paths) |
void | findRelevantFilePaths_ (std::map< String, StringList > &design2FileBaseName, std::map< String, StringList > &design2FilePath, StringList &filePaths) |
void | analyzeHeader_ (UInt &expCol, UInt &fileCol, StringList &header) |
Analyze header, which column represents filename and experimental setting. More... | |
void | getSeparator_ (String &separator) |
Helper class to get separator of the experimental design text file. More... | |
void | mapFiles2Design_ (std::map< String, StringList > &experiments, TextFile &file) |
helper class. which file name belongs to which experimental setting More... | |
Additional Inherited Members | |
Protected Member Functions inherited from DefaultParamHandler | |
virtual void | updateMembers_ () |
This method is used to update extra member variables at the end of the setParameters() method. More... | |
void | defaultsToParam_ () |
Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes inherited from DefaultParamHandler | |
Param | param_ |
Container for current parameters. More... | |
Param | defaults_ |
Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
std::vector< String > | subsections_ |
Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
String | error_name_ |
Name that is displayed in error messages during the parameter checking. More... | |
bool | check_defaults_ |
If this member is set to false no checking if parameters in done;. More... | |
bool | warn_empty_defaults_ |
If this member is set to false no warning is emitted when defaults are empty;. More... | |
Merge files according to experimental design.
This class
Default constructor.
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virtual |
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private |
Not implemented.
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private |
Analyze header, which column represents filename and experimental setting.
void applyDesign2Quantifier | ( | PeptideAndProteinQuant & | quantifier, |
TextFile & | file, | ||
StringList & | fileNames | ||
) |
xxxxxxx
void applyDesign2Resolver | ( | ProteinResolver & | resolver, |
TextFile & | file, | ||
StringList & | fileNames | ||
) |
xxxxxxx
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private |
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private |
Helper class to get separator of the experimental design text file.
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private |
helper class. which file name belongs to which experimental setting
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private |
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private |
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private |
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private |
Not implemented.
OpenMS / TOPP release 2.3.0 | Documentation generated on Tue Jan 9 2018 18:22:12 using doxygen 1.8.13 |