RNPxlModificationsGenerator Class Reference

#include <OpenMS/ANALYSIS/RNPXL/RNPxlModificationsGenerator.h>

Static Public Member Functions
static RNPxlModificationMassesResult	initModificationMassesRNA (StringList target_nucleotides, StringList mappings, StringList restrictions, StringList modifications, String sequence_restriction, bool cysteine_adduct, Int max_length=4)

Static Private Member Functions
static bool	notInSeq (String res_seq, String query)
static void	generateTargetSequences (const String &res_seq, Size param_pos, const std::map< char, std::vector< char > > &map_source2target, StringList &target_sequences)

Member Function Documentation

generateTargetSequences()

static void generateTargetSequences ( const String &  res_seq, Size  param_pos, const std::map< char, std::vector< char > > &  map_source2target, StringList &  target_sequences  )

staticprivate

initModificationMassesRNA()

static RNPxlModificationMassesResult initModificationMassesRNA ( StringList  target_nucleotides, StringList  mappings, StringList  restrictions, StringList  modifications, String  sequence_restriction, bool  cysteine_adduct, Int  max_length = 4  )

static

Referenced by RNPxlSearch::main_().

notInSeq()

static bool notInSeq ( String  res_seq, String  query  )

staticprivate