OpenMS::ims Namespace Reference

Classes
class	IMSAlphabet
	Holds an indexed list of bio-chemical elements. More...
class	IMSAlphabetParser
	An abstract templatized parser to load the data that is used to initialize Alphabet objects. More...
class	IMSAlphabetTextParser
	Implements abstract AlphabetParser to read data from the plain text format. More...
class	IMSElement
	Represents a chemical atom with name and isotope distribution. More...
class	IMSIsotopeDistribution
	Represents a distribution of isotopes restricted to the first K elements. More...
class	IntegerMassDecomposer
	Implements MassDecomposer interface using algorithm and data structures described in paper "Efficient Mass Decomposition" S. Böcker, Z. Lipták, ACM SAC-BIO, 2004 doi:10.1145/1066677.1066715. More...
class	MassDecomposer
	An interface to handle decomposing of integer values/masses over a set of integer weights (alphabet). More...
class	RealMassDecomposer
	Handles decomposing of non-integer values/masses over a set of non-integer weights with an error allowed. More...
class	Weights
	Represents a set of weights (double values and scaled with a certain precision their integer counterparts) with a quick access. More...

Functions
std::ostream &	operator<< (std::ostream &os, const IMSAlphabet &alphabet)
std::ostream &	operator<< (std::ostream &os, const IMSElement &element)
std::ostream &	operator<< (std::ostream &os, const IMSIsotopeDistribution &distribution)
std::ostream &	operator<< (std::ostream &os, const Weights &weights)

Function Documentation

operator<<() [1/4]

std::ostream& OpenMS::ims::operator<<	(	std::ostream &	os,
		const Weights &	weights
	)

Prints weights to the stream os.

Parameters

os	Output stream to which weights are written.
weights	Weights to be written.

operator<<() [2/4]

std::ostream& OpenMS::ims::operator<<	(	std::ostream &	os,
		const IMSElement &	element
	)

Prints element to the stream os.

Parameters

os	Output stream to which element is printed out.
element	Element to be printed out.

operator<<() [3/4]

std::ostream& OpenMS::ims::operator<<	(	std::ostream &	os,
		const IMSAlphabet &	alphabet
	)

Prints alphabet to the stream os.

Parameters

os	Output stream to which alphabet is written
alphabet	Alphabet to be written.

Referenced by IMSAlphabet::MassSortingCriteria_::operator()().

operator<<() [4/4]

std::ostream& OpenMS::ims::operator<<	(	std::ostream &	os,
		const IMSIsotopeDistribution &	distribution
	)

Prints isotope distribution to the stream os.

Parameters

os	Output stream to which distribution is printed out.
distribution	Distribution to be printed out.