LightTransition Struct Reference

#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>

Public Member Functions
	LightTransition ()
int	getProductChargeState () const
bool	isProductChargeStateSet () const
std::string	getNativeID () const
std::string	getPeptideRef () const
std::string	getCompoundRef () const
double	getLibraryIntensity () const
void	setLibraryIntensity (double l)
double	getProductMZ () const
double	getPrecursorMZ () const
void	setDetectingTransition (bool d)
bool	isDetectingTransition () const
void	setQuantifyingTransition (bool q)
bool	isQuantifyingTransition () const
void	setIdentifyingTransition (bool i)
bool	isIdentifyingTransition () const

Public Attributes
std::string	transition_name
std::string	peptide_ref
double	library_intensity
double	product_mz
double	precursor_mz
int	fragment_charge
bool	decoy
bool	detecting_transition
bool	quantifying_transition
bool	identifying_transition

Constructor & Destructor Documentation

LightTransition()

LightTransition ( )

inline

Member Function Documentation

getCompoundRef()

std::string getCompoundRef ( ) const

inline

References LightTransition::peptide_ref.

getLibraryIntensity()

double getLibraryIntensity ( ) const

inline

References LightTransition::library_intensity.

getNativeID()

std::string getNativeID ( ) const

inline

References LightTransition::transition_name.

getPeptideRef()

std::string getPeptideRef ( ) const

inline

References LightTransition::peptide_ref.

getPrecursorMZ()

double getPrecursorMZ ( ) const

inline

References LightTransition::precursor_mz.

getProductChargeState()

int getProductChargeState ( ) const

inline

References LightTransition::fragment_charge.

getProductMZ()

double getProductMZ ( ) const

inline

References LightTransition::product_mz.

isDetectingTransition()

bool isDetectingTransition ( ) const

inline

References LightTransition::detecting_transition.

isIdentifyingTransition()

bool isIdentifyingTransition ( ) const

inline

References LightTransition::identifying_transition.

isProductChargeStateSet()

bool isProductChargeStateSet ( ) const

inline

isQuantifyingTransition()

bool isQuantifyingTransition ( ) const

inline

References LightTransition::quantifying_transition.

setDetectingTransition()

void setDetectingTransition ( bool  d )

inline

setIdentifyingTransition()

void setIdentifyingTransition ( bool  i )

inline

setLibraryIntensity()

void setLibraryIntensity ( double  l )

inline

setQuantifyingTransition()

void setQuantifyingTransition ( bool  q )

inline

Member Data Documentation

decoy

bool decoy

Referenced by OpenSwathTSVWriter::prepareLine().

detecting_transition

bool detecting_transition

Referenced by LightTransition::isDetectingTransition().

fragment_charge

int fragment_charge

Referenced by LightTransition::getProductChargeState().

identifying_transition

bool identifying_transition

Referenced by LightTransition::isIdentifyingTransition().

library_intensity

double library_intensity

Referenced by LightTransition::getLibraryIntensity().

peptide_ref

std::string peptide_ref

Referenced by LightTransition::getCompoundRef(), and LightTransition::getPeptideRef().

precursor_mz

double precursor_mz

Referenced by LightTransition::getPrecursorMZ(), and OpenSwathTSVWriter::prepareLine().

product_mz

double product_mz

Referenced by LightTransition::getProductMZ().

quantifying_transition

bool quantifying_transition

Referenced by LightTransition::isQuantifyingTransition().

transition_name

std::string transition_name

Referenced by LightTransition::getNativeID().