OpenMS
2.4.0
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This class stores a SRM/MRM transition. More...
#include <OpenMS/ANALYSIS/TARGETED/IncludeExcludeTarget.h>
Public Types | |
typedef TargetedExperimentHelper::Configuration | Configuration |
typedef TargetedExperimentHelper::RetentionTime | RetentionTime |
Public Member Functions | |
IncludeExcludeTarget & | operator= (const IncludeExcludeTarget &rhs) |
assignment operator More... | |
Constructors and destructors | |
IncludeExcludeTarget () | |
default constructor More... | |
IncludeExcludeTarget (const IncludeExcludeTarget &rhs) | |
copy constructor More... | |
~IncludeExcludeTarget () override | |
destructor More... | |
Accessors | |
void | setName (const String &name) |
const String & | getName () const |
void | setPeptideRef (const String &peptide_ref) |
const String & | getPeptideRef () const |
void | setCompoundRef (const String &compound_ref) |
const String & | getCompoundRef () const |
void | setPrecursorMZ (double mz) |
sets the precursor mz (Q1 value) More... | |
double | getPrecursorMZ () const |
void | setPrecursorCVTermList (const CVTermList &list) |
void | addPrecursorCVTerm (const CVTerm &cv_term) |
const CVTermList & | getPrecursorCVTermList () const |
void | setProductMZ (double mz) |
double | getProductMZ () const |
void | setProductCVTermList (const CVTermList &list) |
void | addProductCVTerm (const CVTerm &cv_term) |
const CVTermList & | getProductCVTermList () const |
void | setInterpretations (const std::vector< CVTermList > &interpretations) |
const std::vector< CVTermList > & | getInterpretations () const |
void | addInterpretation (const CVTermList &interpretation) |
void | setConfigurations (const std::vector< Configuration > &configuration) |
const std::vector< Configuration > & | getConfigurations () const |
void | addConfiguration (const Configuration &configuration) |
void | setPrediction (const CVTermList &prediction) |
void | addPredictionTerm (const CVTerm &prediction) |
const CVTermList & | getPrediction () const |
void | setRetentionTime (RetentionTime rt) |
const RetentionTime & | getRetentionTime () const |
Predicates | |
bool | operator== (const IncludeExcludeTarget &rhs) const |
equality operator More... | |
bool | operator!= (const IncludeExcludeTarget &rhs) const |
inequality operator More... | |
Public Member Functions inherited from CVTermList | |
CVTermList () | |
Defaults constructor. More... | |
CVTermList (const CVTermList &rhs) | |
Copy constructor. More... | |
virtual | ~CVTermList () |
Destructor. More... | |
CVTermList & | operator= (const CVTermList &rhs) |
Assignment operator. More... | |
void | setCVTerms (const std::vector< CVTerm > &terms) |
sets the CV terms More... | |
void | replaceCVTerm (const CVTerm &cv_term) |
replaces the specified CV term More... | |
void | replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession) |
replaces the specified CV terms using the given accession number More... | |
void | replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map) |
replaces all cv terms with a map (can be obtained via getCVTerms) More... | |
void | consumeCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map) |
merges the given map into the member map, no duplicate checking More... | |
const Map< String, std::vector< CVTerm > > & | getCVTerms () const |
returns the accession string of the term More... | |
void | addCVTerm (const CVTerm &term) |
adds a CV term More... | |
bool | operator== (const CVTermList &cv_term_list) const |
equality operator More... | |
bool | operator!= (const CVTermList &cv_term_list) const |
inequality operator More... | |
bool | hasCVTerm (const String &accession) const |
checks whether the term has a value More... | |
bool | empty () const |
return true if no terms are available More... | |
Public Member Functions inherited from MetaInfoInterface | |
MetaInfoInterface () | |
Constructor. More... | |
MetaInfoInterface (const MetaInfoInterface &rhs) | |
Copy constructor. More... | |
~MetaInfoInterface () | |
Destructor. More... | |
MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
Assignment operator. More... | |
bool | operator== (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
bool | operator!= (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
const DataValue & | getMetaValue (const String &name) const |
Returns the value corresponding to a string (or DataValue::EMPTY if not found) More... | |
const DataValue & | getMetaValue (UInt index) const |
Returns the value corresponding to an index (or DataValue::EMPTY if not found) More... | |
bool | metaValueExists (const String &name) const |
Returns whether an entry with the given name exists. More... | |
bool | metaValueExists (UInt index) const |
Returns whether an entry with the given index exists. More... | |
void | setMetaValue (const String &name, const DataValue &value) |
Sets the DataValue corresponding to a name. More... | |
void | setMetaValue (UInt index, const DataValue &value) |
Sets the DataValue corresponding to an index. More... | |
void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
void | getKeys (std::vector< String > &keys) const |
Fills the given vector with a list of all keys for which a value is set. More... | |
void | getKeys (std::vector< UInt > &keys) const |
Fills the given vector with a list of all keys for which a value is set. More... | |
bool | isMetaEmpty () const |
Returns if the MetaInfo is empty. More... | |
void | clearMetaInfo () |
Removes all meta values. More... | |
Protected Member Functions | |
void | updateMembers_ () |
Protected Member Functions inherited from MetaInfoInterface | |
void | createIfNotExists_ () |
Creates the MetaInfo object if it does not exist. More... | |
Protected Attributes | |
String | name_ |
double | precursor_mz_ |
CVTermList | precursor_cv_terms_ |
double | product_mz_ |
CVTermList | product_cv_terms_ |
std::vector< CVTermList > | interpretation_list_ |
String | peptide_ref_ |
String | compound_ref_ |
std::vector< Configuration > | configurations_ |
CVTermList | prediction_ |
RetentionTime | rts_ |
Protected Attributes inherited from CVTermList | |
Map< String, std::vector< CVTerm > > | cv_terms_ |
Protected Attributes inherited from MetaInfoInterface | |
MetaInfo * | meta_ |
Pointer to the MetaInfo object (0 by default) More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from MetaInfoInterface | |
static MetaInfoRegistry & | metaRegistry () |
Returns a reference to the MetaInfoRegistry. More... | |
This class stores a SRM/MRM transition.
The default values for precursor and product m/z values are set to numeric_limits<double>::max(). Default values for precursor an product charge is set to numeric_limits<Int>::max().
default constructor
IncludeExcludeTarget | ( | const IncludeExcludeTarget & | rhs | ) |
copy constructor
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override |
destructor
void addConfiguration | ( | const Configuration & | configuration | ) |
void addInterpretation | ( | const CVTermList & | interpretation | ) |
void addPrecursorCVTerm | ( | const CVTerm & | cv_term | ) |
void addPredictionTerm | ( | const CVTerm & | prediction | ) |
void addProductCVTerm | ( | const CVTerm & | cv_term | ) |
const String& getCompoundRef | ( | ) | const |
const std::vector<Configuration>& getConfigurations | ( | ) | const |
const std::vector<CVTermList>& getInterpretations | ( | ) | const |
const String& getName | ( | ) | const |
const String& getPeptideRef | ( | ) | const |
const CVTermList& getPrecursorCVTermList | ( | ) | const |
double getPrecursorMZ | ( | ) | const |
const CVTermList& getPrediction | ( | ) | const |
const CVTermList& getProductCVTermList | ( | ) | const |
double getProductMZ | ( | ) | const |
const RetentionTime& getRetentionTime | ( | ) | const |
bool operator!= | ( | const IncludeExcludeTarget & | rhs | ) | const |
inequality operator
IncludeExcludeTarget& operator= | ( | const IncludeExcludeTarget & | rhs | ) |
assignment operator
bool operator== | ( | const IncludeExcludeTarget & | rhs | ) | const |
equality operator
void setCompoundRef | ( | const String & | compound_ref | ) |
void setConfigurations | ( | const std::vector< Configuration > & | configuration | ) |
void setInterpretations | ( | const std::vector< CVTermList > & | interpretations | ) |
void setName | ( | const String & | name | ) |
void setPeptideRef | ( | const String & | peptide_ref | ) |
void setPrecursorCVTermList | ( | const CVTermList & | list | ) |
void setPrecursorMZ | ( | double | mz | ) |
sets the precursor mz (Q1 value)
void setPrediction | ( | const CVTermList & | prediction | ) |
void setProductCVTermList | ( | const CVTermList & | list | ) |
void setProductMZ | ( | double | mz | ) |
void setRetentionTime | ( | RetentionTime | rt | ) |
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